Genomic Location: chr3:407231...410510
NR annotation: XP_056279774.1, putative oxidoreductase YteT isoform X2 [Pseudoliparis swirei]
Species Haliclystus octoradiatus · all data for this species · gene families
| CDS |
| BRAKERHOCT00005006611 |
| Transcript |
| BRAKERHOCT00005006611 |
| Protein |
| BRAKERHOCP00005006611.1 |
| UniProt accession | Description |
|---|---|
| Q6M0B9 | UDP-N-acetylglucosamine 3-dehydrogenase OS=Methanococcus maripaludis (strain DSM 14266 / JCM 13030 / NBRC 101832 / S2 / LL) OX=267377 GN=MMP0352 PE=1 SV=1 |
| T2KNC8 | Oxidoreductase P35 OS=Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1) OX=1347342 GN=BN863_22240 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0011162 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01408 all species → | GFO_IDH_MocA | Oxidoreductase family, NAD-binding Rossmann fold | Family | Interproscan |
| PF02894 all species → | GFO_IDH_MocA_C | Oxidoreductase family, C-terminal alpha/beta domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR051450 all species → | Family | Gfo/Idh/MocA Oxidoreductases | Interproscan |
| IPR000683 all species → | Domain | Gfo/Idh/MocA-like oxidoreductase, N-terminal | Interproscan |
| IPR004104 all species → | Domain | Gfo/Idh/MocA-like oxidoreductase, C-terminal | Interproscan |
| IPR036291 all species → | Homologous_superfamily | NAD(P)-binding domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43377 all species → | BILIVERDIN REDUCTASE A | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000166 all species → | Molecular Function | nucleotide binding | Interproscan |
BRAKERHOCP00005006611.1.Genes whose expression across the transcriptome samples of Haliclystus octoradiatus tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Haliclystus octoradiatus, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
