Gene detail

Detailed information of BRAKERHOCP00005006758.1 in Haliclystus octoradiatus

Genomic Location: :...
NR annotation: XP_021379659.1, serine/threonine-protein phosphatase 4 regulatory subunit 3A-like isoform X2 [Mizuhopecten yessoensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERHOCT00005006758

ATGTCTAACACACGAAGAAGagtcaaattatatattttgaacgAAGGAAACCAATGGGACGACCATGGAACTGGTCATGTATCATCTATGTATGTAGATCATGGAAATCTACAAGGAATTGTTTTACTTGTTTTATCAGAAGAGGATGGCTCAATGCTTCTTGAATCACGTATCCAAACAGACACAGTATATCAGAAACAACAGGATACTTTAGTTGTTTGGTCAGAAGATGACAATGATTTGGCCCTTAGTTTTCAAGAAAAGGAAGGCTGCGATGAAATATGGGAAAAGATTTGTCAGGTTCAAGGTAAACATCCATCTGTGGATATAACACAGGATgttgaagaagaagaagaaacagCTGACGAGCTATCAGATGCCGCATTAGAATTACCACGATGTGAATTAAGTCGCCTTGGTGATATTGCATCACTATGTCTTGGTGTATTAACAAATTCAACCCAAAAAGATAAACTAGCTAATTTAttagaagaagaagaatacATCAAAAAACTTTTGGATTTATTTCGTATATGTGAAGATATGGAGAATACAATGGGGCTTCATCATctgtttcaaatatttaaagcgatatttatgttgaataaaaacTCATTATTTGAACTGCTATTGTCGGATGATGCTATATTCGATGTTGTTGGCATACTCGAATACGATCCAAATAAAAAGCATGTATCTCATCGTGAATTCTTAAAAAATAAAGTGAACTTTAAAGAAGTTATACCAATTACAAATGAACAGCTTCGTGAAAAAATCCATCAGACATATCGTGTTCAATATATTCAAGATGTCCTTGTACCTGTACCTTCGTTATTTGAAGAGAATATGTCTACTCTTAGctcatttatatttttcaataaaattgcTATAGTTAACATGATACAGAGTGATAGCAAATTCATAACTGAATTATTCACACGACTAACAGACGATGAAATCTCAGACGACAAAAGAAAGGAACTGGTTCTCTTTTTGAAAGAATTATGTACATTATCACAAATATTACAACAACACAACCGAGACGCATTTCTCAAGTGTTTGTCGTCACATGGTTTACTTTCAACTATTCGGATGCTTTTGaattttgatGATCCAACCATGAATAGTGCCCTTGTTGATGTATTGTGCTGTATCACTGAATACAGTCCAACTCTAGTCAGAGAATACATGATTGAGGAAGGAAAGTCTGGTGACGAGGATTCTTTATTGATTAATATGCTTATTGAGATGATGACAAGTGGAGGCGACAGTAGTATGTCAATTCTTCTGATGTGTCTTCTGAGAATGCTTCTGGACCCTGAAAATATGGGACTTGGTGCAAATAAAATGGAGCGTTCTGAGTTCCTAAGCTACTTTTACAAACACAGTATGCATGTACTGACTGCCAGCTTATTTGCGGTGACATCAAATGGAGACACTCCGTCAAAAGATGACTTTAAGACGGTGTCAACACTGGATCACATTCTTGATTTGTTATCGTTCTGTGTTGAACATCATACAAATCACATCAAGACTTATATTATAAGTAAAGAACTCCTACGCAGAGTTTTAGTTCTACTAAAATCGACACATTCTTTTCTGGCTTTAGCTGCCATCAGATTAATTCGTAAAATTGTTGGTATGAAAGATGAGTTTTACAATCGACATATCATCAAGTTCTCTTTATTCAATCAAGTTGTTTCTACATTAATACGAAATGGAGATcgttataatttattgaattctgctattttggaattatttgattttattcgcCTGGAAGATATCAGATCCCTTTGTTCACACATTGTTGAAACGCATATGACACTTCTTAATAAAATCTCATATGTACAAACGTTTGCTGGTCTCAAACTAAAGTACGAACAAGAGAAAGATCGTCAAGAAAATGCTAACAACTCAGACAGAAATTCGAATCACAGTATTACCGCAATCGCCCCATCGCGGTTCCGTCGTGATGCCCGTGAAATGGATGAGGATGAAGAGATGTATTTTGGAACAGAAGATGAAGAGGATGGTGATCAACAACCACAATCGACACAATCTGAAAGTTACAACAACGCTGTTAAACCAATTAGTGCTAGACTAAAAGATGTAGACTTGATTGATAACCTACCATCCAAATTATCAAAAAGTCCTCCTGGTTTACCGACAAGTCCAACATCtcctaaaatatttaataatgataCGTCCCCTCCAAAGATTATACAAGATtcattaacaaataatatcaaGTCAGCACCAGCTCTCAACTGCAAAAAGCTTGGTGGCCTTGTTGATTATCCGGATGATGAAGAGGACGAAACAGCGGACACAGAACTTGATTTAGCATCGCCATCTAAAAAACAGAAACTTATGACGTAA

Transcript

BRAKERHOCT00005006758

Protein

Uniprot

Uniprot term	Description
Q6INN7	Serine/threonine-protein phosphatase 4 regulatory subunit 3 OS=Xenopus laevis OX=8355 GN=smek1 PE=2 SV=1
Q5SP90	Serine/threonine-protein phosphatase 4 regulatory subunit 3 OS=Danio rerio OX=7955 GN=smek1 PE=1 SV=1
Q6P2K6	Serine/threonine-protein phosphatase 4 regulatory subunit 3A OS=Mus musculus OX=10090 GN=Ppp4r3a PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04802	PP4R3	Phosphatase 4 regulatory subunit 3	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006887	Domain	Serine/threonine-protein phosphatase 4 regulatory subunit 3-like, central domain	Interproscan
IPR051137	Family	Serine/threonine-protein phosphatase 4 regulatory subunit 3	Interproscan
IPR000697	Domain	WH1/EVH1 domain	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR011993	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23318	ATP SYNTHASE GAMMA-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005654	Cellular Component	nucleoplasm	Interproscan
GO:0006470	Biological Process	protein dephosphorylation	Interproscan
GO:0006974	Biological Process	DNA damage response	Interproscan
GO:0030289	Cellular Component	protein phosphatase 4 complex	Interproscan
GO:0072542	Molecular Function	protein phosphatase activator activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K17491	SMEK, PPP4R3; protein phosphatase 4 regulatory subunit 3	-	DNA repair and recombination proteins	ko03400	deepkoala