Gene detail

Detailed information of BRAKERHOCP00005008731.1 in Haliclystus octoradiatus

Genomic Location: :...
NR annotation: PFX27186.1, Protein NRDE2-like [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERHOCT00005008731

ATGGACAATActgaaaaaaatgttgtgcAATCATTCTTGTTCCCATCTGCAATATCATCTGTTGCAGGTGCAGCTGAAGAAAGCAAGAAGGAGCTTGAAAAGACAGATGACTATAATGAAGGACCTTTGGAATATAATTGGTTGTCTCTTGAAAGTTACAAAGATGTTCCTACCCCAGTTGAGCTaacatttccttctgaatcGTCAACATATTCAGACAGTGCAAGCAATAGTCAAGAAAATGCTCAAATATCAGCTTCATCGCCAGTtagaaataaatcaaagaagaaaactaagcaaaagaagaaaaaagatATAAGGAAAAGGAAGCCAAAAACAATATGGCTAGATGAAGCCCTTCGTGTAACAGATGAACCATATAGGATAGACAAAACTAAAGATCATGATAACTTACAATTTAATACATTATATAGACTAGATGTTGCAAgatcaaatattaaatattttaaatgcctTGGTATAAAAGGAAAAAATAGTGTTGCTTATAGATTATAcgcaaaaaagaaattaaagaaaagaaaaattactGCTGCAATTAGATATCACGATGTTAGAAAATATGATAATGCTACAACATGTTTTCAATCGACGCAAGACAAAAAATCTACTAATTATGCTAAAATTAAGATACTAAGTCAGGAGTTTTTACCACTAGATTTTGACGAGAAATCGACTGCAAAAGACGATAAAGATCAAttggaaataaataaagatcCATTTACTTCAACGATCGAAGAATTTAATATATACCTTCGTGATACACCACTTGACATTAATAAATGGTTAGAattttgtgaatttcaagGAAAACTTGTACAAGGAGatttaaatgtttcaactACATTTACAAATGAATCAATACTACTTAATGGTtcacaaacaaaaataattgtaGAGAAACAAATTTCGATTTTGGAAAGAGCTCTAGAGAAGAACCCAACATCTATggaattaattatgaaatatatgaGCTTATGCCGAGAAGTAACTGAATACgaagattataataaaaaatggaaaaatatgatatttaaGCAACCCAATAATATTACACTATGGCgacaatttttattaacaagTTATTCAAGTTTTGCCAATTTCAATGTCACTTCATGTTTATctgattataaaaaatgtttttcaatgttaATTGCAATCCAAGAAGGTGTTATGGTATCTCATCAACCTGGAAACGATTTTATCGATGGAATGATTGGAATATTTTTGCAACAGGCAATTTTCTTATCTCAAGCAGGCTACACAGAAAAGGCTATCGCATTGTTCCAATCTTTGATTGAATTCAACTGCTTTTGTCCTGATGACCTTCAACAGGTGACACCTGAATTgagaagaaatttatttcaatgctaTTTTGAAAGTGAATTCCCCAGAATTGGTGACTGTAGTTGTAGTGGTTGGAATATATGGTATTCAAAATACAAGGACGATTCAACATTTGCTCCATTAAGTTGTACACACATCAATTCTAAAGACACAAATATTGaagaaattgacaaaaaactGAAACAGAAAATGGCGTGGCTTAAACTTGAATGCCTTCGTAGTGAACATCAGTTTATCCCATACAGACAGACATCATCTAATAATGACGATTGCGATGACGCTGATCGTATGATACTATACAGTGACGTCTCATATTGCTTATTTAGAATTTCATCTGCTGAACATCAGTTACAATTATTACTAACATTTTTGGCTTTTCTTGGGTGTCCTATATCACTTGATTTATTATCATGTCATGTcaagcaaatatttttaaaaactaAAGAGCATTTGATCTATCCAACTTCATCAGCTATTCTCAATTTGCAGTTATTCAAAggaatcaaaacaacaaattctaaattttttaacatGTCTTCAAAAGTTCCTGATCGTAATATACTTTCTGGTACacttttaattttcataagagagattttcaatcaatgtttaaattatttgaaagagactagtatcatttcaaatgtatttttacaatttgaattgatttattttatgaatacTGTCAGTGAATTGACAAAGGCTGATAGAAAGATTGCTAAGAAAGCACTCCAAGAgaaatgcaaatcaattttaggttgtaaaaataatagaaattgtttaccatTATGGACAACGTATGCTGTGATTGAAAATCATCTtggaaatattaataatgcaAAAAGGGTTCTAATCATGGCGTTATCATCTGGAAACAATACAATTACTGATAACGATACACCACCTTATGTAGCTGCACACAGGTTTTTAATGGAATTAGAATTGGATCTCTTCTCATTCAAGGGACAACATAGCTGGCCTAGTAATACACAAAATAAAGTCATTACTATACTATCATCGTTATCATCATATAGACTATTACCGTTAAAACTAGACGGTGAACAACCAACTTCTTTAGtacttttaaaatgtaaatctgattttgaaaatggaacAAAAGAATTAAGAAAACTTTTAACATCTAAGAACTTATATATCAATCATACACAATTATGTGAATGGATTTGTTGTCATgcaatatttgaattattcaattcaaatttacataCTGCATTGTCTCTTCTAGAAAGTGCTTTGAGTATGGTGAAAGTCATTGATATATCTACATTAACAGACTCTGCAGTTTTACTAATGACATATCAAACACAATTAATGAAAGAAGCTTTTAATATGGGTGTAATTACTCACAAAGAATTCCAAATAGCTGTTAGAGATGCCCTCTGTGAATATCCTCATTCGTTATGGCTCAAAGAACTATTTACAATGTCTACAGATAATTTTTTGAACTCGTTAGATGTGAGACGGCAGTTAGAATCATctgctttgaaatatttaaatccaTGGAATTGGTTGTTAGCAATCGGATACGAAAAGTTGAAGCAAGATAAATTTATAGCTGTTCAAAGCTTATCAGATGGTGTTAACGATGAATCTAGTAATGCTATTGCTATCACAACTGTTCCCACAAGTGGGATTAATCATCGGATCAGATCTTTGTTTATGAAAGCGACTGTATCGGAAGGATCAGCATATTGCATTTCACTTTGGCGTCGTTTCATTGAGTTTGagGTTTCTTTGGGGAATGTTGAAAAAGCCAAGCATGTTTATTACAGAGCTTTGCAGAATTGCCCATGGAGTAAAGATTTGTTTCAAGATTCTATTGAATATTTGGATGAAGACTTTGGCAATACTCTTGATTTGATGCTTGAAAAAGAAGTAAGGGTACGACTGCCTGTAGAAGAATTTGATATGCTATGGAATGAATAA

Transcript

BRAKERHOCT00005008731

Protein

Uniprot

Uniprot term	Description
Q80XC6	Nuclear exosome regulator NRDE2 OS=Mus musculus OX=10090 GN=Nrde2 PE=1 SV=3
Q9H7Z3	Nuclear exosome regulator NRDE2 OS=Homo sapiens OX=9606 GN=NRDE2 PE=1 SV=3
Q54QP0	Nuclear exosome regulator NRDE2 OS=Dictyostelium discoideum OX=44689 GN=nrde2 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08424	NRDE-2	NRDE-2, necessary for RNA interference	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013633	Family	siRNA-mediated silencing protein NRDE-2	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR003107	Repeat	HAT (Half-A-TPR) repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13471	TETRATRICOPEPTIDE-LIKE HELICAL	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0031048	Biological Process	regulatory ncRNA-mediated heterochromatin formation	Interproscan
GO:0071013	Cellular Component	catalytic step 2 spliceosome	Interproscan
GO:1902369	Biological Process	negative regulation of RNA catabolic process	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan