Gene detail

Detailed information of BRAKERHOCP00005014646.1 in Haliclystus octoradiatus

Genomic Location: :...
NR annotation: CAH3121414.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERHOCT00005014646

ATGCCGAAAAATAAGGGAAAGGGAGGTAAAAATAGGCGGAGAGGAAAGAATGAAAACGAAACAGAAAAACGTGAATTAGTTTTTAAAGAAGATGGTCAAGAATATGCCcaggttgtgaaaatgcttgGTAATGGTCGCCTTGAAGCACTCTGTTTTGACAGTGTCAAGCGGCTATGTCATATCCGTGGTAAACTGAGAAAAAAGGTCTGGATTAATACTGGTGACATTATTTTACTTGGTCTTAGGGATTACCAAGATGCCAAAGCTgatgttattttgaaatacacTCCAGAAGAAGCAAGGAATCTTAAGGCGTATGGTGAATTACCTGATAATGTAAAATTCAATGACCTTGTAATCAACCCTGAAGATAATAATGACGAaatagaatttgaatttgatcacGATGAAGAAGATGAGATTGATAATGTATATTTGCAATATGCCCTCAGCTTGGATAATTGCAGCATTCCTAACTTGGCTGATATGTTGTTTGAACGCTGTACTAATTCCTCATGGGTAGTTACATTTAAATCACTTATCACTTGCCATCATTTAATGTCTGGTGATAGTGAGAGGTTCATTCAATATGTTGCATCTAGATCTACAACATGGACACTTCATAACTTTCTGGATAAAAACGGCGTGCAAGCTTACGACATGTCACATGCAATTAGACGTTATTCCAACTACTTGAGTGAGAAAGCATTTTCGTATAGACAAATGGGTTCAGATTTCTGTCGACTGGATCGAGGGAAAGATAAAGGAGTGCTGAGAAATATGGATACAGCCAAGCTTCTAAAGGCAATGCCTATTCTCCAGAAACAAATTGATTCACTCCTTGGTACAGAGATCAAATCCAGCGAACTTACGAATGGTGTCATAACAGCTGCATTCATGTTACTATTCAAGGATTTGATACGTTTGTTTGCTAGTTATAATGATGGTATCATCAATCTCTTAGaaaaatattttgaaatgaagaaatccGATTGCAGAGATGCTTTGgatatttacaaaaagttTGTCAATCGAATGGAAGCGGTATCTGCATTTCTGAAGATTGCTGAAGATGTAGGAATCGACAAAGGAGAAATTCCTGATCTAACGAGGGCGCCATCAAGCCTATTAGAAGCTCTTGATGACCACCTTCAGTCACTGGAGAAAGGCAAAGGTGCTGTACCGCCTGTCTCTCCCATATCAATACcatcattttcttttaatGCTGGGTTAAGTAAAGTGGATGGTTTTACAAGTACTGCAGTCGATCTGGAAAACGCAAAAGCTGATGATTATTTAGAGCAGGAAAGGAAGGCATTAGCCGAATTCGAGAAAAGGAAGCTCAGGGATGCTCCTACACCTCGCCCTTCTCCACAACAACTTCCAACTGCTACACCTTTATCTCCACCAACGCAAGTATCACGTAACCCACATCATGCTGCACAGTTTGCACAACCAGCACCATCTAACATTGCAACTTCGCAAACAGCAGCAAATGATTTATTGCAATTGAATGCATCGTTTGATTCGTCATCATTtgctttcaacaacaaattatCACAATCTTCTAGAGCAGTATCATATCCTGGTCAACCTGGCAACACTTTATTTCCAGCAAACCCTGCTTTAGGAGCTCAGCCGACGACTGCGATAACTGTTTCATTCTGCGTACCAGGCTATTCGGCAAACAACCCATTCGCTAGTTCTGCAGTTGGTTCCCAACCAAGAACAGTTGATTTTAACGGTGCATTTCATCAAAATCAGCATGATGCAACACCGGCATTAGGTGATTTATTGATGCCATCAGTTGTTGGTAGTCAACCGATACCTCAGACTAATACCAATGACAATGGCGACCCAAAAGATCTTAATCAAACTTTAGCAAGAATGGCAAAATCACTAGATGGATTAGCGTTGAATAGCATAACCCAAAGAGCAGCGACTTCCAAAGAACAACACCAATGGAAACCTAAACCAGACTATGTGAAAACAGGCGGGGCTAACTTCCAAGGTCCTGGCATGGCAAAGTCTTCTATACCAGCTGTTCAACAGGGATGGAGTCAACCACCCCATCAGCAAATACCAATGACAGGGTATGCAGCCCCTGGAATGGCACCATATGGGATGCAGCAACCCGCTATGATGGCTGGACCAGCAGGGTTTCCTGTCGCTAATCCTCAACTGCAACAACAACGACCAATGATggcaaatttcaataatcaatttcaacagcaAGATCCGTTTGGTCCAGTACCTGGATCGCAGATCGATAAGTTTATCCAACTATCTGCTGTTCACCCTGCAATAAAATTTGGTTATGTGATTGATTCTAGTAAGTATATGTTTCAAGTTGGAGTGATGGAGGTTGTCGCTGCTATATTCCTTCTTATAGGACCACGCCCCCTGCGTCTGTTGAGCTGTCTTTTACTTTCATCCATTATGATTGGGGCATTGTATTCGCATCATATGCTTAACGATCCAATACATGAACTTTATCCTGCTGCTGGCTTGCTATTATTACTTTTTATGCGACTGCATTTCTTGTTGAAGTATGGAGGAGGGTCAAGGAGCCGTGAAAAGAAAGACTGA

Transcript

BRAKERHOCT00005014646

Protein

Uniprot

Uniprot term	Description
O55012	Phosphatidylinositol-binding clathrin assembly protein OS=Rattus norvegicus OX=10116 GN=Picalm PE=1 SV=1
Q7M6Y3	Phosphatidylinositol-binding clathrin assembly protein OS=Mus musculus OX=10090 GN=Picalm PE=1 SV=1
Q13492	Phosphatidylinositol-binding clathrin assembly protein OS=Homo sapiens OX=9606 GN=PICALM PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13564	DoxX_2	DoxX-like family	Family	Interproscan
PF07651	ANTH	ANTH domain	Repeat	Interproscan
PF01176	eIF-1a	Translation initiation factor 1A / IF-1	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032808	Family	DoxX family	Interproscan
IPR001253	Family	Translation initiation factor 1A (eIF-1A)	Interproscan
IPR014712	Homologous_superfamily	ANTH domain superfamily	Interproscan
IPR011417	Domain	AP180 N-terminal homology (ANTH) domain	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR008942	Homologous_superfamily	ENTH/VHS	Interproscan
IPR013809	Domain	ENTH domain	Interproscan
IPR006196	Domain	RNA-binding domain, S1, IF1 type	Interproscan
IPR045192	Family	Clathrin coat assembly protein AP180-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22951	CLATHRIN ASSEMBLY PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003743	Molecular Function	translation initiation factor activity	Interproscan
GO:0006413	Biological Process	translational initiation	Interproscan
GO:0005545	Molecular Function	1-phosphatidylinositol binding	Interproscan
GO:0030136	Cellular Component	clathrin-coated vesicle	Interproscan
GO:0030276	Molecular Function	clathrin binding	Interproscan
GO:0048268	Biological Process	clathrin coat assembly	Interproscan
GO:0005543	Molecular Function	phospholipid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0000149	Molecular Function	SNARE binding	Interproscan
GO:0005546	Molecular Function	phosphatidylinositol-4,5-bisphosphate binding	Interproscan
GO:0005905	Cellular Component	clathrin-coated pit	Interproscan
GO:0006900	Biological Process	vesicle budding from membrane	Interproscan
GO:0008021	Cellular Component	synaptic vesicle	Interproscan
GO:0016185	Biological Process	synaptic vesicle budding from presynaptic endocytic zone membrane	Interproscan
GO:0032050	Molecular Function	clathrin heavy chain binding	Interproscan
GO:0072583	Biological Process	clathrin-dependent endocytosis	Interproscan
GO:0098894	Cellular Component	extrinsic component of presynaptic endocytic zone membrane	Interproscan