Gene detail

Detailed information of BRAKERHOCP00005016856.1 in Haliclystus octoradiatus

Genomic Location: :...
NR annotation: XP_020620588.1, eukaryotic translation initiation factor 4 gamma 2-like, partial [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERHOCT00005016856

ATGCCGAAATCAAAAGGACAAGCACAGAAACCTGACGAAGCAGGACAAAATCAAAGTCTTGCTGCTCAAATTGCACAGAATCCAGCATTACTTGCTgctgttaataataaattgtctGGTCTGGCTGGACACTCATCTGGTTATATAGAAAGTTTACCTCCAGTTATCAAAGCCAGGGTAAATGCATTAAAGAATATCCAGgTTGAATACACCAACATTGAATCACAGTTCCACAAAGATATCCATCAAATCGAAATGAAATATGCTGAACTTTTCAAACCTTTATTTGAGAAGagAGAATCTATAACAGGGGGTTCTTATCAACCAACAGAAGAAGAATGTCACTGGGAAGAACCTGAAGACTCAGACGACGAGGAAGAATTAAAAGCGGtgaaagaagaaaaagaagCCAAACCAACTGAAGACCTAGCAGTGAGATCGATTTATTTTATCTTAACAAaAACGAAAGGCATCCCCGAATTCTGGTTAACTGctatgaaaaatgttgatttgatTGGGGAAATGATCCAGCCACAAGatgaagaaatattaaaatcattacgcGATATCCGATATGTGATGACTGATGATAAAACAACTGCTGGAGATGAATGCGATATGGGTTTCATTCTTGAATTTCATTTCGATGAGAATGACCATTTTGAGAATAAGATGCTGACAAAAGTATACACCATGAAATCAGACCCTGATAAAGATGATCCATTTGAATATGAAGGGCCAGAAATCATTGGCTGCACTGGGTGCACAATTGACTGGAAAAAGGGAAAGGATGTGACACATAAACTTGTAAAGAAGAAGCAGAAACATAAAGGCGGACAGACAAGAATGGtaacaaaatcaatcaaaaacgACTCTTTCTTCAATTTCTTTGACCCCCCTGAAGTTGTTGAGGATGATGAGGAATTGGATGAGGAAACTGAAGCATTGCTAGCTGCTGACTTCGAAATTGGTCATTTCATTAAAGAACGCCTTATCCCAAAGGCTGTATTATACTTCACTGGTGAAGCAATTGaagatgatgaagatgatgatgagGATGATGACGAAGgcgatgatggtgatgatgacgatgatgaaaATGATCCTGACTACAAACCGCCAAGTACCGGCCGTTGGGTCCCCTCGCATTATAGCAGAGAGGtaaaagataaaaatgaagTAATCTGCAGAAGAGTACGCGGAATTTTAAATAAGTTGACAcctgaaaaatttgaaaagctTGTTTATGAGCTACTTAACGTTGGACTTGACAGTAAAGATATTCTCAATGGAGTTATTCTGTTGATATTTGAGAAAGCTCTTGATGAACCAAAATACAGTAATTTATATGCACAGCTTTGTCTGAGATTCAGCTATGAGGCTCCAAATTTTGATGACATTTCTACTGGTCCATGTTCCTTCTTACGTCTTCTGCTTTCAAAATGTCAAGAAGAGTTTGAAAGTCGATCAAAAGCATCCGCAGCATTTGATCGACAATCAACACCACTCACACCAAAAGAGCAAGATGAAAAATCCACAGCAAAAAGAAAAATGCTGGGAAATATTAAGTTTATTGGCGAGCTTGGCAAACTTGGGTTGGTACAAGAATCAATTCTCCATAAATGTGTTCAGCAGCTTCTCTTCAAGAAAAAACACACTACTACTGCAGATATGTCAGAGGATATTGAATGTCTTTGTCAGATCATGGGCACCGTAGGAGGGCGTCTTGATGTTCCGAAAGCAAAGAACATAATGgggcaatattttgaaagaatgGAGACCCTCTCCAGTTCAACTGACTTCCCTGCAAGAATTCGTTTCATGCTTCAGGAGGTTCTTGAACtaagaaaaaaaaaaTGGATTTCAAGGCGTGTTTATAGTGATGGTGGTCCTAGATCTGTCTCACAGATGCGGATGGAAGCTTTCACTAAACGGTTCCCGCATGCTCCTCTTTCCCAATACATTTTTGGTGCAGATGGAAGGCCTGTTAATGGCGCTGAAATAACAATGTCAAGAAACGAACCACTCATACATGACATGAAGGACATCTTTGGTAAAGAACAACAGATCACAAAAATTCCACTAGGGCAAAAGCTTCAGCAAAAGCCAGACCTATTTGAACCTCATTATTTGAAAAGCAAATCTGGTCGTGGTCAAATCTCATCTGATCAACAAGCAAACATCAAACCATTGATAGCCTCGAAGTCCCAAGCTAGTCAGAGATTCGAAATATTCAAGACCGATGCACATGTACATGCTAGACCTAAAGAAAAGACAGCAATTGCTCCATCTAATCCACAACATGGTGGCAAATCTGTCTGGAATACTGGCTTTAATACCACTTCTCAAGCGTCAAGTTTTGTTTTCGAAAGAAATGATAGACCATCAAAAACGGAACAGATGACTTCTTACCGATCCCCTCCAACTGAACCCTACCGACCATACTCAAGACAAGTACCTGAAACAAAACCATTTCATCAGTTTAACCGTACTCCACATGCAATCAATGGAGAGATCAGCTTACGCCCTGCATCATCATTGGCTGCCAAATCTTTAAGACACGAAAACGACGAAAAACCGAGTTTATTGAATAAAGGAGAAAAAACTGAACTGAAGAAAGGATTATCAgaaagtgaatacaaagccaAAGTGGGTGAAATTTTAACATTATTCCATGAGGACAAAGCGTATGTTCCTGCCTTCGATTCTATTAAAGGCTTAAAAGCACCCGCAAGgctTACAAAATACTTGGTAAAAGAACTCATTCAAAAAGCTGCCGCATGTCCTGATGATGATAAGACTCAAATTGAAGCATTCCAGCAATTGCTTCTCAAATGTTATGAAGGAAACGTATTCACTGCTACCTTATACTTTCAGCATTTTATAATGCAATATGAAGGTGGTGCATTGAGAGGCAAGACAGACTTTGCATCTGACACCCTGGCATTCCTATTAGCTAATGAATGTGTTTCTGTTGTTGATGTGtttgataaattcaaaaatggtTCCTGTTACCCACTCATCCTTACTACAATCaagaaattacaaaatgaaCACGGGAAGGATTGGGTTAAGAATAAGCTTGAATCTTCTAATGGTCATTTGAGACAATGTTTTCCAGCTGATGAACAGACTGACACCTATGTTTGGACTATTGTACAAGAAAACGAACTGCAATACCTTTTCCCAATGTTGAGCTTACAATCTGAACTTACTGAACTACTACAACTAGAgcccaacaacaacaacatttataaatgGATTAAGGACACTGCTGAAAACCAATTGAAAAATACCTATGAGCTCATTCGAGTTGTGATGTTGAGCACACTTGATGTTACCTTTTGTAGCTCGGATATCACTCTTAGTGAAAGCGAAGAGACTGTAAGCAATGGAATATCAGCTTCAGAACACTTGAATGACAGtgaaaaacaaacattagCCAGAATGAAAGTGATCCTTGGTAAATTGATAGGAGATGATGTCACACTTCAGATTGAGACAGTCTATGCATTACAAAGTTTCTGTCATTCCAAAGAGTTCCCTAAAGGTTTACTTTTGAAACTCTTTGTTACCTGTTACGAGCTAGAGATCATTGAAGAAGATGCATTTGTCAAATGGAAAGAGGATATTAATAACACGTATCCTGGAAAAGGAAAGGCATTGTTTCagGTTAACTCATGGTTACAATGGCTGGAGACCGCTGAAGAAGAGGAAGGAAGTGACCAGGAGGAAATCAACTGA

Transcript

BRAKERHOCT00005016856

Protein

Uniprot

Uniprot term	Description
P79398	Eukaryotic translation initiation factor 4 gamma 2 OS=Oryctolagus cuniculus OX=9986 GN=EIF4G2 PE=2 SV=1
Q62448	Eukaryotic translation initiation factor 4 gamma 2 OS=Mus musculus OX=10090 GN=Eif4g2 PE=1 SV=2
Q95L46	Eukaryotic translation initiation factor 4 gamma 2 OS=Bos taurus OX=9913 GN=EIF4G2 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02854	MIF4G	MIF4G domain	Repeat	Interproscan
PF00956	NAP	Nucleosome assembly protein (NAP)	Family	Interproscan
PF02020	W2	eIF4-gamma/eIF5/eIF2-epsilon	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR037231	Homologous_superfamily	NAP-like superfamily	Interproscan
IPR003307	Domain	W2 domain	Interproscan
IPR003890	Domain	MIF4G-like, type 3	Interproscan
IPR045208	Family	Initiation factor 4G	Interproscan
IPR002164	Family	Nucleosome assembly protein (NAP)	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23253	EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0003743	Molecular Function	translation initiation factor activity	Interproscan
GO:0016281	Cellular Component	eukaryotic translation initiation factor 4F complex	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006334	Biological Process	nucleosome assembly	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03260	EIF4G; translation initiation factor 4G	-	Translation factors	ko03012	deepkoala