Gene detail

Detailed information of BRAKERHOCP00005017798.1 in Haliclystus octoradiatus

Genomic Location: :...
NR annotation: XP_032794973.2, transcription factor collier isoform X2 [Daphnia magna]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERHOCT00005017798

ATGGAAGCTTGCTACGTAATTATATGCTTGATTTCTGCCTTGGCTAATTGTGATCTAGTCAATTCGGAAGAACATGGTGGCCTTTTGCCAACCAAAAGTTATGTTCTAAACCTTGATTTGCCTCCAATCGAACGATGGACAGAGATGTCCAAAGATTATGCTATATATTCAAAAGATTTAATTAGAATCTTAACAATGGTGATTGGATCTCCAATCAAGCAAAAAATCATTGTTGATTTGGCAGAAGTCTATCATTCATATTTGAAGCAGCCCTATAAAGATGAAGTGACAGGTCTTGCAAAAGGGTGTAATATTTCCATTGGTTACGCAACTTGtttaaatctattttattCGCTCACAGCAAACCAGCGTCAAAATCATAAGATGTGCACCAGTATCGTTTCTATTGATCGCAATGGAACGATGCTACATGGAAGGAATCTGGATTTCGATTACAACCAATTGCTACGAAATATTACTTTTTCGTTGTCATTTCAAAGAAATgGCAAAGAAATGTATTCATCGACTGGATTCTTCGGCCAAGTTGGTCTCTTCACGGCGCAAAAGCCTCAGGCGTTTACAATTTCATTAGATGAAAGACACACTGGCGAGTGGTGGATGGCAATTATGGAAATATTAACAGACGGCAGAAATGCGCATGTGCCGTCTTTTCTCATCAGAGATGTCATGGAAGAAGAGAATGATTTTGATGACGCCGTAGTGAGGTTGAGCACAGCACATCAGTTGGCCTCGTCATATTACATTGTCGGTGGAATGAAACCATTGGAGGGGGCCATCGTCACCCATGGACGATGGACCACACCCGATGTCTTCTTCATGAATCAAACGGATACAAAGTGGTTTATGGTTGAGACAAATTACGATCATTGGACAAGCCCGCCTCCTCATGACGACCGCCGTGACATAGCCATCAACGCGATGAATAAAGTGGGTCAATCCAGCATATCACTGGAAACCTTGCTCGAAGTGTTATCTGTTAAACGCGTTGCCAATAACCATACTATCTACACAGCATTGATGATGGCAATCCCTCGTGAGATATGCCGCGctgaatttttaaaacaacCGCCAGAAAATCTGCGCAAAAGcaacttttttcattttgttgttcGCTTATTGGATGATTCAGATCGGCCGATTCACGTCACTGATGGACGATTTGTTGGTTTTATCGAACGTACAGAGgAAGAAAAATTGATCAAGAATGGTATAATCTATTGTGTGAACCTTGTTTACGAGGACGGCTATAGCTGCCAACAGTTTctatatttcaaattgatcgATGCGCATTCGCAGAAAGTCATTGTGTACGAAGGACAGGATAAGAACCCACAGATGTGCCGTGTCCTCCTAACACACGAGTTTATGTGCAGTCGATGCTGTGAAAATAAGTCATGTGGGAATCGAAACGAGACTCCATCGGATCCTGTAATCGCCGACAGgatgttcataaaaatattcatgaaatgcaaccagaattgtttaaaaaatgctGGGAACCCAAAAGAAATGCGTCGTTTTCAAATTGCCATAGCAACAACAGCTGATTTATCAAAGACAATCGGCGTGTCCAGTAAGATGTTCGTACATAATAATTCGAAACACGGCAGACGGCAATCAAGCAAAAAAGATGGAATAGTAGCACTTCCTCCTGTTATACGAGGTGTCATTCCGTCCGATGGCTGGTTGGCAGGGGGGACACAAGTCATTATTATTGGAGAGCGTTTCTTTGAAGGTCTGCAGGTCATGTTTGGCTCTTCGGTCGTCTGGAATGTGGAGGTATTCTCATCGACAGCATTAAGAGTAGCTACTCCACCTAATTCTGACCAGGGcgtggtcgaagtagcaacaTCGTTAAACTCTCGCCCATTCTGCTGGGCGCCAGGCTTTTTCTACTATTCTTCATTATCTGAGCCAACAATCGATAACGGTTTTCAACGTCTTTCCAGACTCATACCCAGGTACCCTGGTGATAACATCAAACTTTCAAAGgaaataatattaaaaaggGCTGCTGATGTTGTCGAGAGCATTTATGCGGCATCTGGAAGAGGGTTCGACCAATTGCAATCGATGGCCTCTTTCTCGTACGAATCAATCAGTAGCAGTGGAAGAAGTAGCAGATCTTCGATGACGTCACCTGCCATTCCGATCGTTCTTGAATCTTCTTTCAAGCGAACAGACCAATCACAACCTAGTATTACTAACAATGAATGTTATTCTTCAGAAGAAGTTCGATTACTTGACACCAAGGATCGTCAACCGTCACCGTCATCTGGAAGTGAGACTCAAAGGCAGCATAAACCAAACAAAAGACCGAGGTCTATCAGTACGCCAATAACTCCCCCATtcgacaacaacaacaacattctACCTCATGTCTCAAGCTTCACTACGTTAGCTATCTGCAGCCGTAATCCCGTTGCGTGTTCTTCCATTGGCAGCCCTCTTTCCCATCATGCTGCCGTACCTTTTGGCTCTTATACAGGTTAG

Transcript

BRAKERHOCT00005017798

Protein

Uniprot

Gene family

Uniprot term	Description
Q63398	Transcription factor COE1 OS=Rattus norvegicus OX=10116 GN=Ebf1 PE=1 SV=2
Q9BQW3	Transcription factor COE4 OS=Homo sapiens OX=9606 GN=EBF4 PE=1 SV=2
Q8K4J2	Transcription factor COE4 OS=Mus musculus OX=10090 GN=Ebf4 PE=2 SV=1

Gene family	Subfamily
Transcription Factors Family	COE

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02275	CBAH	Linear amide C-N hydrolases, choloylglycine hydrolase family	Domain	Interproscan
PF01833	TIG	IPT/TIG domain	Domain	Interproscan
PF15508	NAAA-beta	beta subunit of N-acylethanolamine-hydrolyzing acid amidase	Family	Interproscan
PF16422	COE1_DBD	Transcription factor COE1 DNA-binding domain	Domain	Interproscan
PF16423	COE1_HLH	Transcription factor COE1 helix-loop-helix domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR029132	Domain	Choloylglycine hydrolase/NAAA C-terminal	Interproscan
IPR038173	Homologous_superfamily	Transcription factor COE, DNA-binding domain superfamily	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR032200	Domain	Transcription factor COE, DNA-binding domain	Interproscan
IPR002909	Domain	IPT domain	Interproscan
IPR003523	Family	Transcription factor COE	Interproscan
IPR029130	Domain	Acid ceramidase, N-terminal	Interproscan
IPR032201	Domain	Transcription factor COE, helix-loop-helix domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10747	TRANSCRIPTION FACTOR COE FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09103	EBF, COE; early B-cell factor	-	Transcription factors	ko03000	deepkoala