Gene detail

Detailed information of BRAKERKREP00000000454.1 in Hydra viridissima

Genomic Location: :...
NR annotation: XP_012563776.1, pre-B-cell leukemia transcription factor 1 [Hydra vulgaris]

Gene Structure

Sequence

Uniprot

Gene family

Uniprot term	Description
Q7PMT1	Homeobox protein extradenticle OS=Anopheles gambiae OX=7165 GN=exd PE=3 SV=2
B3DM47	Pre-B-cell leukemia transcription factor 2 OS=Xenopus tropicalis OX=8364 GN=pbx2 PE=2 SV=1
B4F6V6	Pre-B-cell leukemia transcription factor 1 OS=Xenopus tropicalis OX=8364 GN=pbx1 PE=2 SV=1

Gene family	Subfamily
Transcription Factors Family	Homeobox

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03792	PBC	PBC domain	Family	Interproscan
PF05920	Homeobox_KN	Homeobox KN domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356	Domain	Homeobox domain	Interproscan
IPR005542	Domain	PBX, PBC domain	Interproscan
IPR050224	Family	Three Amino acid Loop Extension (TALE) homeobox	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan
IPR008422	Domain	Homeobox KN domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11850	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0009887	Biological Process	animal organ morphogenesis	Interproscan
GO:0048568	Biological Process	embryonic organ development	Interproscan
GO:0048666	Biological Process	neuron development	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09355	PBX1; pre-B-cell leukemia transcription factor 1	-	Transcription factors	ko03000	deepkoala