Gene detail

Detailed information of BRAKERKREP00000001079.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: XP_002162637.2, malignant T-cell-amplified sequence 1 [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4G009	Malignant T-cell-amplified sequence 1 OS=Rattus norvegicus OX=10116 GN=Mcts1 PE=2 SV=1
Q9DB27	Malignant T-cell-amplified sequence 1 OS=Mus musculus OX=10090 GN=Mcts1 PE=1 SV=1
Q2KIE4	Malignant T-cell-amplified sequence 1 OS=Bos taurus OX=9913 GN=MCTS1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008457 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01472 all species →	PUA	PUA domain	Family	Interproscan
PF17832 all species →	Pre-PUA	Pre-PUA-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002478 all species →	Domain	PUA domain	Interproscan
IPR016437 all species →	Family	MCT-1/Tma20	Interproscan
IPR004521 all species →	Domain	Uncharacterised domain CHP00451	Interproscan
IPR015947 all species →	Homologous_superfamily	PUA-like superfamily	Interproscan
IPR041366 all species →	Domain	Pre-PUA domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22798 all species →	MCT-1 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0001731 all species →	Biological Process	formation of translation preinitiation complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07575	MCTS, TMA20; malignant T-cell-amplified sequence	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000001079.1 across 29 RNA-seq samples of Hydra viridissima. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

16TPM > 0

7Conditions

261.1Max TPM

45.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole body	18	7	57.93	261.14
Whole	6	6	34.82	54.05
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	1	23.54	23.54
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	1	21.48	21.48
symbioic hydra M9 strain · symbioic hydra rep1	1	1	28.08	28.08
symbioic hydra M9 strain · symbioic hydra rep2	1	0	0.00	0.00
unannotated	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977	261.14
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977	235.80
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977	225.69
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977	157.25
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977	99.52
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977	39.88
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977	23.45
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397	54.05
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397	35.87
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397	31.41
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397	30.57
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397	30.45
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397	26.59
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902	23.54
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902	21.48
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902	28.08
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902	0.00
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636	0.00

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.