Gene detail

Detailed information of BRAKERKREP00000001099.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: XP_002155488.3, regulator of MON1-CCZ1 complex [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

BRAKERKRET00000001099

atggcATCTTATTATTTAGAGTTGGTACAGAATTCATTAACATTTCCGCCTGTTTCCAAAGATATCAATGTGTTCTTTGATGAATGCATGAAGCAGGTGTTTGCAGTTTCGAATGACAATGACAGGACTCGCGTACAAGTAAAGAAGTACGACAGTAACTTAAATACAATATTTCAACTACAGAACAAAGGACATGtaatttctattaaattttcacCCAATCAGTGTATTTTAGCAATTCAAAGATCTGTAAAATCTatagattttgtaaatttcaatgaaGGAGCAAAGTTTGAGGAGTATTCTCAAACATGTAGAGGTCGTTCAACTCAAATTATTGGTTTTTGTTGGACAGGCAACAATGATATTGTCTTTGTTACAAATCAAGGAATTGAATTTTACCAAGTACACAGTGAGAAGTATTCTTTGAAGCTACTCAAAAATTATCATACTTCAGTAAATTGGTTTGTCTTTCTTCCTGATATTTTCGTGTTATTACTATCATCTGACATAATGGGAAATATGATACAtccttatctttttaaaaatggttctATTACTAGATTATCAAAGTTTGAAGTTGAGAATCCTATTTGTTCAAGGAACCCTCAGCCTACTGCATTGTTAGAACGAGATGTAACAGTtgctaatatttataataatatttatgtagtAGTTTTACGAAATCATCCTCGTTCATTAAATTCTATTGGTGCTGAAATTGTTTTGTACCAGTTACAAAAGGATGGCCCTGCTAAAAAGACAGCTGTTTTACGTTTAGGTGCAGTTGGGAGGTTTGCTGTAAATGTTGTTGATAACTTGATAGCTGTTCATCACCAAGCATCACGAACATCAATGATATTTGATATTGGTTTACAGGGAGAGTTTGATGGTCAAGTGACTTTTTATTATCCCGTACTTTCACCTCTGCCCATTGAGCCTGTGTTCTTTAATTGCGATTCCAAAGCTTTTGAAACCTCAGAACAAAGCTTTACTTGTGAAACTTATTCTGCAAATTGGGTTGTATTTCAACCCAATATTATAATTGATGCCAAACTAGGATGTCTTTGGAAACTTCAAGTTAAACTATCTTCACTTGCAAATATGATTAATGACAAAGTTAAGCTTATAGACTTCCTACTCTTGCGATCTGGAAGTAAAAGTGTTATTATATCAGTTTTAAATCAGCTACTTACACCTGGTTGTTCATGTAATCTTGGTATCATAAcacaagtttttgataaattgaataaagtttattCAGAATACCTGGAACTCAATAATACAGGAACAGCACAGGTTCAAGAGACCACTAGAGAAAATGAGTTTACTGGATTTTGGTTCCAAAATCAGTCAGTTATAGAGCAAAGTGACATGTATGTTAGTGTGTTCCAACCTTTTGTTGAAAAGGAATGTTCTTATAAGACAGTTATTGCAGTTTTGTTAGAGTATATTCGATCATTAAGCCATTATAAGATCTCAGtggaatattatttaaatgaataccTTATACAAATTCTTTCTGATCAAAAATTGTACTATCAACTGCACCAGTTTATACAATAtcatgtttttaatgattcaAAATCGTTAGCCTTATTGCTTCTTTCCTTGCAAAAAGAATACCCTCCAGCATTTAACTTAGCTTTAGATATGCTTAAAAGATTAGGCAGCAACCACGATGATATTATTGAAGTTTTGCTAGAAAAAGACGGTATAATTTCTGCATTAAAATCATTGCAAGAAAATGATATAATTGATTTGGTTGCTCCACAAAAATTTCTAAGCGCTGCTTTAGCAACAGGTGATGATCTTGTGTTTCATAcagtatttactttttttcaacaaagaaaTGTTAAGCTCAGAAAGAGCACAAAGTTTGTTCGGAGTGAACAATGCGAAaagtttgaacaaatttttgaagaaaaatttggtAAATCTTGCAAGAgtattgatgaaaatttacTAGAAAAGTCAGAGGTTTTGCAGATATAA

Transcript

BRAKERKRET00000001099

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96DM3	Regulator of MON1-CCZ1 complex OS=Homo sapiens OX=9606 GN=RMC1 PE=1 SV=2
Q8VC42	Regulator of MON1-CCZ1 complex OS=Mus musculus OX=10090 GN=Rmc1 PE=2 SV=1
Q9VRX1	Regulator of MON1-CCZ1 complex OS=Drosophila melanogaster OX=7227 GN=Bulli PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006226 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07035 all species →	RMC1_C	Regulator of MON1-CCZ1 complex, C-terminal	Domain	Interproscan
PF21029 all species →	RMC1_N	Regulator of MON1-CCZ1 complex, N-terminal	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040371 all species →	Family	Regulator of MON1-CCZ1 complex	Interproscan
IPR009755 all species →	Domain	Regulator of MON1-CCZ1 complex, C-terminal	Interproscan
IPR049040 all species →	Domain	Regulator of MON1-CCZ1 complex, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12897 all species →	COLON CANCER-ASSOCIATED PROTEIN MIC1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005765 all species →	Cellular Component	lysosomal membrane	Interproscan
GO:0010506 all species →	Biological Process	regulation of autophagy	Interproscan
GO:0031902 all species →	Cellular Component	late endosome membrane	Interproscan
GO:0035658 all species →	Cellular Component	Mon1-Ccz1 complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24763	RMC1; regulator of MON1-CCZ1 complex	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000001099.1 across 29 RNA-seq samples of Hydra viridissima. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

10TPM > 0

7Conditions

67.7Max TPM

17.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole body	18	2	5.99	54.01
Whole	6	5	50.62	67.72
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	1	37.31	37.31
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	1	35.18	35.18
symbioic hydra M9 strain · symbioic hydra rep1	1	1	28.44	28.44
symbioic hydra M9 strain · symbioic hydra rep2	1	0	0.00	0.00
unannotated	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977	54.01
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977	53.83
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397	67.72
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397	63.19
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397	62.62
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397	58.13
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397	52.06
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397	0.00
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902	37.31
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902	35.18
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902	28.44
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902	0.00
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636	0.00

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.