Gene detail

Detailed information of BRAKERKREP00000001117.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: XP_012556364.1, exocyst complex component 1 isoform X3 [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

BRAKERKRET00000001117

atggcTGCGATAAAACACAACCTTCAACAAGACTTATTCAGACCAAGCGATGAAGCATTATACTCTGTAGTAAATGTTGCAAAAGTAGGAGctggtaaaaagaaaaaaacaacatttctaTGCGCTGCAGttACTAAAGAAAAACCTTTCCAAGTTAGAATATACAAAGTAGAGAAGTctgaaaaagaagtttttaaaaagaaaatctgcTGGAACTTAAgtgatttaaaagttgtggATGGAAAGTTTAATCAAACGgaATCATTAGAGTTTGATTTACACTTTGAAAAAGTATACAAATGGGTTGCTAGTCGGACAATTGATAGAAATCAATTTATTGAAACTCTTTGGATTCTTGTTCGTCGTTATGGTGGAGAATCAAAAccaaagtttcaaaatgtcAGTCAGCACATTTTTGATGcagagCCTACTGATGCATTTCAAGCCAGTGTTTTAAAAGGCATACAGCAAAATCAAGAATCTCAAGATGACTACCAAAAACTCACACCAAAAGAAGAGAATGatcttaacaaaatattgGATCAATTTGAAGGTGCGCTTACTAAAGTTGAGATTTTTACTGATAAGCTGTCAACGGAGTTACAGCAACTTGAATATattaatATAACATCACTGATGGGCTCTGAGCAGCAAGCTAAAGATTTATTATCTTTGATTGATAAAAGTGCAGATGAGTTAAACATACTTGATAAGAGGTTACAACTGTATGATCATTGTCTGCAGAAAGTGAGTGACCAAATGGGACAGATGGAATTTAAAGACAATCGCATGGAAGTTGAAAGATCAAGTAACAAACAGCTTTTAGAGGAGATTAAATATATCGttggtAGACTAGATATCTCTCAGAGACATATTCGTGCTTTGCAAGAAGGAGATTTGTATAATTCTTTGGGAATTGCAGAATGTATCTCAgctgcaaaaatattgttagatGCATTTCATACACCATTTAATCCTGGTATCACAGAATTGCGAGCAGTTCAAGACCAACTTGCAGaagtaatgaaattaaaatctcaGTTTGCTCAGCGGTTTTATGATCATCttgataaattcattttacaacatAGTAATATTGACCAAGCGTCATACAAGCCAAACAATGACCTTTCAATACCTGCTCATGATTCTGTTCATGAAGATTTCCAGCCATATATAGAACTCATGAAGTGGCTAAAAGATCTTGATAATGCAAAATATCTTGAAATAAAAGCAcACTATGAAgaagctttttcaaaaacatttgaaaaggAATTTACTGATTATCTTGGATATGCTAAAATGAAAGCTTCAATGAAAGTTAAAGgTTCAAAATCTGGCTTTTCTTTAACAAGTATGTCAAGTTATGAAAGCACAGGCAAAAGTAAAACCTCCTTGTATCGATTCAAAAAGGAAGGCAAAATAAAGAGGTCAAATTCAATAGAATCAGTAGATTCTTCAGTTTCTGCAGAATCTTCAGCATCATCAGCATTTATTGGGGGAAATAATGTGACTCAATTTGACCAGgtGTTTGATGTTGTTTTGTCTGAAATTGAACCTTATGTATCTGCAGAACAAGATTTTTGCAGTACATTTTTCCATCTTCGCTACCCAGGCGACAGTCAAGatCAAGCCACAACCAATCTTTTAACTGATGATCTTACAGATGGTGGAATGTTAAGTAGAACTAAGTCTGATGCAAGAAAGAAAGTTGTTGATGAAGTACGAGATATGatgaaaaacatgttttcatTCATGGATCAACAggttcaaaatttcattttattcgGAGAGAGCCTTCATCCTCTGCATATCCTTTACATGATGTATCGTATACAAAATCAAGCAACACATTTGGTCACTAGCCAAACAACTGGTGCGCCTCCTACTTTTCTAGGAACACTATTTGGAAGCTGGCTTGTTTTCACAAAGAGACTATTTGACAAATATGTGgattcactttgtgaaaaaataaaagaaggaAACAAGGTGACAAAAAAGAAGCGTTCAGGAATTCTTACTGATGTTATAATTGTTGAAcaatttttcaaGTCTTCTGAAAGTATCTTTCGTGGTTCTGAAAGACGTGGTGAAATTGACAAAGCTTATCAAAAGCTCATTAGTGTATTAGTAGATAAGATTTATTTAGTTGCAGAAACCAATGATAAGCCTCCACCTGAAATTGTAATGTTTGaaaattaccATTATCTGCATgGTATGATAAGAGGATTAAAGAATACCAATTTAGACAATGATAAAAAGGGAGTCGAACAAAAGTATTATGAGGTCATGCATCAATATATTGCAACAAGACTTGGTCGACCTTTGGATAGAATGAGTAGATTTTTCCAAGGGGTAGAGTCCTGCATCAACTCTGGTGTCAGAGTGGAAGATATCGGCTACCAAATTGCATTAAATCAGCAGGAACTAAAAAACGTTATAAAAGAGTATCCGCCGAAAGAGGTCAAAAAAGGCTTAGAAGTGCTTTATAGAAAAATCGAAAAGTACGTCACCGAAACTGGATTGACTCAgGTATTGTGGCATAACTTGCAAGAAGCATTCGTTCGGCAGTATGAACGTTACCAAGAGCTAGTTAATCTATGTTATCCTAACTCAAACATAAAGCTTCCAGTGACAattgatgaaattttagaaTTCTTTTCCAACATCGCGCAGTCTCACTAA

Transcript

BRAKERKRET00000001117

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8R3S6	Exocyst complex component 1 OS=Mus musculus OX=10090 GN=Exoc1 PE=1 SV=4
Q9NV70	Exocyst complex component 1 OS=Homo sapiens OX=9606 GN=EXOC1 PE=1 SV=4
Q9VVG4	Exocyst complex component 1 OS=Drosophila melanogaster OX=7227 GN=Sec3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002314 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15277 all species →	Sec3-PIP2_bind	Exocyst complex component SEC3 N-terminal PIP2 binding PH	Domain	Interproscan
PF20654 all species →	Sec3_C-term	Exocyst complex component Sec3, C-terminal	Repeat	Interproscan
PF09763 all species →	Sec3_CC	Exocyst complex component Sec3, coiled-coil	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028258 all species →	Domain	Exocyst complex component Sec3, PIP2-binding N-terminal domain	Interproscan
IPR048628 all species →	Domain	Exocyst complex component Sec3, C-terminal	Interproscan
IPR019160 all species →	Domain	Exocyst complex component Sec3, coiled-coil	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16092 all species →	SEC3/SYNTAXIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000145 all species →	Cellular Component	exocyst	Interproscan
GO:0005546 all species →	Molecular Function	phosphatidylinositol-4,5-bisphosphate binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006887 all species →	Biological Process	exocytosis	Interproscan
GO:0006893 all species →	Biological Process	Golgi to plasma membrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19983	EXOC1, SEC3; exocyst complex component 1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000001117.1 across 29 RNA-seq samples of Hydra viridissima. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

7TPM > 0

7Conditions

3.4Max TPM

0.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole body	18	2	0.29	3.45
Whole	6	3	0.01	0.04
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	0	0.00	0.00
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	1	0.05	0.05
symbioic hydra M9 strain · symbioic hydra rep1	1	1	0.67	0.67
symbioic hydra M9 strain · symbioic hydra rep2	1	0	0.00	0.00
unannotated	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977	3.45
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977	1.84
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397	0.04
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397	0.03
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397	0.00
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397	0.00
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397	0.00
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397	0.00
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902	0.00
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902	0.05
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902	0.67
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902	0.00
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636	0.00

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.