Gene detail

Detailed information of BRAKERKREP00000001243.1 in Hydra viridissima

Genomic Location: :...
NR annotation: XP_012563485.2, uncharacterized protein LOC101234786 isoform X1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERKRET00000001243

ATGACCACACCCCATAGCCCCACTGTGTTGGAAAGTGACCCACAATCTTCAGAAACTTCACTTGAAAATAATGATCTTGGAAAGGAATTGCTTGAAGCTGCCAGACTTGGTGACACAAATCGTGTTAGTAATTTGATGAGCAACGGAGCACCACTTACTAATGATTGGTTAGGAACAACACCGCTCCATCTAGCTTCCATCTATGGTCATACTGCTGTTGTTGAAATACTCATTAAATCTGGCATCAGCAGAGATGGGCGTAATAAGGTTGATAAAGCTCCTTTGCATTTTGCATGTCAGCACGGCCATTTTGAAATAGTGAAATTACTCGTTGATAATGGTGCCAATGTCAATTCCATGGACATGttaaaaatgacTCCATTGCATTGGGCAGTGGAGGCGAACaattatgaaatttgtttGCTGCTTCTGAAGTTTGGAGTAAAAACTaatcttcaaaataaatttggaAAGACTGCGCTTCAGATAGCAAAAGAAAAGTCCTTACTGTCAATTATTGAGTTGCTCAATATAAAAGAGATTAATAATAGTGcGTCATATAAAAGATTAGATGATTTTGGTACCACCTTTCATTGCGGAAATGCAACGAGTACTTCATCCTCTAATCATACAACAAATTCCATTGTTAAGAATTCTAACCTTCCAACAGATCAAATTGCTCATTCTATTTATTTGCCATCCTCAAATATTCACATTCCACTTAAAATGCCATCTGAAATTGCGGCCTTatctaaagataattttaatcCAAATATTCTTCACAGTGGAATCCCAGTCATCACTTCGCTTGCATTAAGTATGCTCCCTCCAAGTATCCAAGCCATTCCTTTAAGTATAGGCTCATCCTATAGCACTCAAGAGACAACTATACCCATTTCATTAAGTGATACACCAAACgtgttttgtaataaaatttgctGTTCTCCTGTTTCACAAGTTTTTACAACATCTTCGCCGCAAACTCTAAGTCAACCGATAACCAGTTGTAATACTCAAGTGAATAGTTGTACTCAAAACCCAATACCAACAGTTCAACCGTCTAACCTCTTACAAGAGCCCACAGTTCCTATAAACATTCCTTTTAGTCTGCTTACTCAAATAATAGATAGCGGAGTAAAATTGTATGCTCGTCAATCAATCTCAGATGTGGCTACAGGTTTTGTGGGTATAGATACACCAATGGGAACAATACCTATTTTACCTAGCAATATGGAAGATGGACTGCAACTTATAGCTGTTAGTAGTGAAAGTAACACGGCGCCTTCTTTACATTTTCCATGCTCACAAACATCTACTGCAGTTGATCCAATTCATCAAATTGGACATAACTCAGTTCCCTTGTGTTTCCATTCACATGGTCTGGCCCAGTACCCGGTAGGTGCAGCTGGAGTAAATCTGATTTCAACTCATAATGGTGGTTTAGACTTTCCTAGTTGTATACTGGAAAACAAGGGTACTAATGAAGGGGGTTTTCAACTGATTGCTGTTGGAAACGAAAGACCCACAATACCTTCAAATAGCTTATATTATTCTCAGCTTTCTACTTCGAACATTTCATTTCAACAAGTTGTACCTAATCAACCGTCTCCATTATTCTTTCATTCAAATTCTATGAACTCGCATCCAATGCGACATCCTGGTCTGTTTTCTGTTCAAAATGGAGGATTACATTTTTCGAATGGTTTTTTTGACCAAAAAAGTGTCGTTGCGCaaaCTTCTCCGATGTTTCTTTCAAATGGACTGTGTGTTCAACCCTACATCAAACAGTATTGCCACCCACTACTTCCATCTCTTCAACCGTTGGATTTAACCTCGCACAACCATATACGTCCAATTTATGTTCCTGTAAATAGCAACCCGTTGGTTCATCAATCCTCTCTTTTTCCTTATTACGGACAATCCATTTTAATGCCGCCTATGCCATCTTCCGCTGACCTTCTGCAACAGGCCCCTATCACGTCTACTGACCATTCGCCGACAGTTCACAAATCTTCAGTTTCAAAAGGAACGACTACAGAAAATATGTTAACTCCAGAACCAGATTCTTCTACTTAG

Transcript

BRAKERKRET00000001243

Protein

Uniprot

Uniprot term	Description
Q1RMI3	GA-binding protein subunit beta-1 OS=Bos taurus OX=9913 GN=GABPB1 PE=2 SV=1
Q00420	GA-binding protein subunit beta-1 OS=Mus musculus OX=10090 GN=Gabpb1 PE=1 SV=2
P81069	GA-binding protein subunit beta-2 OS=Mus musculus OX=10090 GN=Gabpb2 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR050663	Family	Ankyrin Repeat and SOCS Box	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24193	ANKYRIN REPEAT PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000976	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K21413	ANKS1; ankyrin repeat and SAM domain-containing protein 1	-	Membrane trafficking	ko04131	deepkoala