Gene detail

Detailed information of BRAKERKREP00000001244.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: XP_002163723.3, FHIP family protein v1g243165 isoform X1 [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

BRAKERKRET00000001244

ATGAGTACTTTAAcaaatgaagaaaagttaaaacttgaAGTTGAAGATCTATGGAACAAGTGTTTAGAATTGTTAAATACTGAATATGAGCTCCTAGACTCATTCAAAGTTGAAATCATTTCTAACACtatattacaaatatcaaCAGTCATGATAGAAAATAGCATAACAGATGAGATGGAAATggttttatgcaatttttgtaagcaagaagatatttttaatagaatttacAGGTGGACTGGTTTGAATCGCAAGTACTTAAAACAAATGGCTTTTGTGCAACTAACATCCTTTAATTCCCTTGTTCAGAAAGCTGGTGGAAAATTGTTAGGATGTAAACAAGTGATGATACCTTTGCTATTATTAATGTTATCTTTAAAACCCACAGACACTCGCAGAATTCCACCTGAAGTggaatttttatatgtaaatattttatacaatatatCTCAGCGAATTTcaaatacatatttattagatttattatCCCATGATTTATATACTCCCAatgaagatttcaaaatttctcgtttcacttttttcgaattattgcttttttacaCCCATAAACCTGGTGAAGTTGGAGAAATGGCACGTTTAGCTATACTTTCCTGTCTGAAGTTTGCTATAACTAATGATCCACTGAATGAATATATATGCCATCAAACTGCTGCGTGTGTTataattGCTGGTGGTCTCAGCGCGCGCTACTCGTCTCTTCCTACAACATTAACTGTAAGCTCTGAAGATTGGTATAGCATTACAAAAGCAGACTTAgaaaaaatgtctgaaatGCGGGCCTTCTTGAATTGTCTTTCATTCTGTTGTAAAGTCATGGAATGTGGTAATAAGTTAGTAACTTCAAAACTGATGCCTTTAATATATGATGGTTTTTTAATGTCTGTACTTGCTCCTGCACTTAATCAGCCTCTTGTTGAAGGACAGATTGCTGCCCTTGCATATCTGGATTTGTTTTTGCGATTTATTACAAGCGAGTATTTGatggagatttttttaaaagccttGCTTACAGATGCATATGATAACAAACCACTCATCAATTTACTCATTTGTCATATAAACTCAGATTCAGAacagctTGCAATGATTACCATGCAATTGTTTCAAACcctcttaaatttaaattgtgaaGACATACTCTTCCACTTGATATTTagGTATTTGCTCCCTTGTAATCATATTCTGCCGAATCAAAAACGAACAATCAAAGAGATggatttttattgcaaaagtgccacaatgtttttatacttaataCCAACATCCTGCATTAAAGCAAGAAAGGAAGAAGAGTCAGAAGAGGCTAGCCCTTTGTTATCTATGAAAAGCTCACAAGTGTCTAACTCAACTGAACATATAATTCATAATAGTCCacagtttacaaaaaagtatagtTTTGACAGTAGTGTGAAATCTAGATCTAGTGACACTAGCATGGATTCAAGTCTAAATAGTTACTCATCAAAAGATAGTTGCTCAACATTAGATGTTCAGTCATTTGAATTGATGGCATATTTAGTTGATGCCAAAAGCTTAATAATGTTATGTAAAAGAGCTTGTAAATGTTGGTCTAATGCTTATGATGGAATGGATGTTATACTAGATAACTCAAGTGAACGCTATTCTCATCTCAGCAGCATGGTACGAACTAAGTCTACAATTTCCACTAACATAAGCAAAAGTGTTTCTAGCAATTCTATAAATTATGATGATTCACTTATTGGCTTAACTACAACTGATTGTCTTGGTCCATTTCTTAACGCACTGTTTGATAAGCTAGAAAAAATGATGGAAAGTAGTGTTTACTTGAATCTTCGTCTGACAAGTTTAGTTACAAGACTTGCCTGTTACCCTCAACCATTACTAAGGTCATTTCTTCTTAATTCAAACCTTGTTATACAGCCTGGTGTCAGATCATTATCACGGGTGTTAGCTCGTGTTTCATCAATAAGTGATGCATTTGTGTCACAGTTACATGACCACCAAAAACTAATTAGAAAAGCTAGAAGAAACTTACTTATCCAACAAGAAGAGCAAAACAAACAATTGAGTCAAGAATCTACCAAACGCTTTAGTCTGGATTCTAGTAAGttagtaaaaaacttaaatgataTTGAAGACACATTTGAAATTAATAGCGTTATTCAATCAGATCAAAAGACTGGCAATTGCTCAAATTATGAACAAAAATCTCCTACTCTGTCAAAAACTCTAAGTGTAGATGACATAATGTGTCTTTCGCCATGGTCATTAAGTCAAAAGGAAAAGcaagatgataaaaatgaaaagcttgTTGCTTTAAATACCAGACATAGTAAACTACATCCAGCTATTCCTAAATTAGGATTACGTAGTCCCAacaagaaagattttaaacaacaaagcaGCATCGATAAGCCAGATTTCCATATAAAGAATTTGGAAGGCGTAAAAAACGCTGTTTATTGCGTGGTTATTCTAGAAGAATTTATGAAAGAGCTTGCTGCAGTGTCAATCGAGCAGACGTTGTTATAA

Transcript

BRAKERKRET00000001244

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7S6A1	FHIP family protein v1g243165 OS=Nematostella vectensis OX=45351 GN=v1g243165 PE=3 SV=1
Q66H54	FHF complex subunit HOOK-interacting protein 1B OS=Rattus norvegicus OX=10116 GN=Fhip1b PE=1 SV=1
Q7PZ36	FHIP family protein AGAP011705 OS=Anopheles gambiae OX=7165 GN=AGAP011705 PE=3 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007621 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10257 all species →	RAI16-like	Retinoic acid induced 16-like protein	Repeat	Interproscan
PF19311 all species →	KELAA	KELAA motif	Motif	Interproscan
PF19314 all species →	DUF5917	Family of unknown function (DUF5917)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019384 all species →	Family	FHF complex subunit HOOK interacting protein	Interproscan
IPR045668 all species →	Conserved_site	FHF complex subunit HOOK-interacting protein, KELAA motif	Interproscan
IPR045669 all species →	Domain	FHF complex subunit HOOK-interacting protein, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21705 all species →	RAI16 PROTEIN-RELATED	Interproscan

Gene Ontology

No Gene Ontology signature was detected for BRAKERKREP00000001244.1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26420	FHIP1, FAM160A; FHF complex subunit HOOK interacting protein 1	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000001244.1 across 29 RNA-seq samples of Hydra viridissima. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

14TPM > 0

7Conditions

250.1Max TPM

27.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole body	18	11	25.71	74.42
Whole	6	1	10.80	64.82
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	0	0.00	0.00
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	0	0.00	0.00
symbioic hydra M9 strain · symbioic hydra rep1	1	0	0.00	0.00
symbioic hydra M9 strain · symbioic hydra rep2	1	1	17.51	17.51
unannotated	1	1	250.10	250.10

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977	74.42
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977	68.67
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977	54.69
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977	49.67
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977	49.12
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977	39.37
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977	38.95
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977	37.23
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977	19.02
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977	17.01
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977	14.66
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397	64.82
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397	0.00
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397	0.00
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397	0.00
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397	0.00
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397	0.00
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902	0.00
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902	0.00
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902	0.00
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902	17.51
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636	250.10

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.