Gene detail

Detailed information of BRAKERKREP00000001334.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: XP_002168010.2, uncharacterized protein LOC100214209 isoform X2 [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

BRAKERKRET00000001334

ATGAAATGCACCTGGTTGGAAGCTCTGCTGCTACTAAACTTATGGATGGTAGCATTTTCCAGACCAGTTTTAGACAACAGTGAAATACTTCAAGTAATTAAAGATATAAGTAGTTTGGATAGCTTAATCAGTGAAAATGATGCTgctgatgataatgatgatgatgacgatgatgataaGGATGATAATGATGcacaattaacaaaaaatacttttgcaaACTCTACAAAAAAAGCTCTTATTCATAACTCAACCGTAAGTAAAGATGTTTCAACTAAAGATGAAATATCCAAAGCAAACAAAGAAAGTGAAGTGGATTCAATACCAATTGGTCAACGTTTGacaagtgaacaaaaaattgaaagtaagCCAAATGTAGTTGACGAAAATAAAAGTCATCAACCAGAAGCTCAGTCcaaagaaataacaaatgcaaaaaatttgggAAAGTTGATAGAGAAAAATAAGCCGAGTCAAGAACTAAATGTTACTGGTACTGATTCATCAACTATGAGAGATCAGAAATCAAAAGAAAGCGACAgtgataatgaaaataaaaaatctaacgATGTTACAAAAACgaaaagtttaatttctaaaaacgaagaaaaagaTACAAGTTCTGAAGAAGGAGCAGAagaagatgatgaagatgatgtaAAAGAAGATGAGGATGGATCAGGATCAGAAGAAGATACAGAAACGAACTCTAGTATTGAAACCAAGATTGCTGCAGAAAATAAAACTCCAACAACAGAAGATGAAACCCAAGACTCATCTGAATTATCATCTGTTGAATCATCATCTGTTGAATCTCCAGCAATTGAAAGTGAAGAAACTGAACCTGAAGACAAAGacgaaaaagtgaaaatgtttttcatttctccttttgaaaaaaacaaagaaaaagaatcaaCAGCAAGACAAGTTCTTACTTACCCTGCAACAAGCCACGGTAGTTATATTCACCATCACGGGAGTCCGTCTCATATTTGGAGCAGTGATTATCCTTACTTTGCGTATGGCTACAGTTGGGGCTGTGGGAATCATATAAATGGCGACGGTCAccatggtttaaaaaaatcgaagGTAAAAGAAAACGAAGATagcaaaaaaagtgatttgcTATGCCGTGATTACATGTTACTTCCAGCTATTACACCTGCTGCAATTCGTGCagtagaagaaaaagaagaaaacgcAAAAACAAGACAAAACGTAATTGCCAAAGACATAGCATGTGACGAAGACGATACTGCTTGTACGCAACGTCAGGTAATTGGAAATATGGCAGGCGGATCATTATTTGGAGATGGAATGGGAGGTCTTGGAATGGGTTTTCCTGGAATTGCTGGCATACATACAGGTGTGAGCGGTTATAATTTAGCTGGAGGGTTTGGTCATGGTCATGGTGGTCATGAATACGGGCATGGTGATGCTCATGGATACGGACATGGACTTCATCATGGTCATGAGTACCAACATGGTTTTGGAGATGTAGGTGATGGTTTGGGAGATGGTTTTGGTGGAGCTTACGGCAACAGTTTAGATGGAGGTTTTGGTGGGTACGGTGGACATTATGCTTTATCAAACGAACGCAAGTTTCctaataatgaaaattcaaatcaagcagaaaaagcagaaaaaaaagcaaatgttaaaaatgaaaagcgaaaagcaaaaaaaaaacatgttgtGGGAACATTAGAAATTGATAATGGGTTAGGCTATCAGGGTGGTAACCAATTTGGAGGAGAACTTGGTAATTCAGAACTAACTGAAGGTCACGGATTTGTTGGCAGCAGAATTGGTTTTCCTTTAGCAAGTGGAGTTGCTAATGGCGTTTATGGAGAAGCTATTCCAACCGTTCTTGGTGTTGGACTAAAgaataagaatttattaaatgcaGATACCGAATATAGTCATGCCCTAAATAACGGTCCAAGTTTTAGCTTAGCAGGTTCTAATCTTGGGGGTATGATTAATGATCAACTTAACAATTTTGGTGGTGGAAATATGATTAACGGAGGAAATTATCCTTTTGGAATAGGTGAAGAAGGACATGTGTATAACAATGACAACGATGTTGACTATGAACCTGAGTCTGGAAACATTGGGGACGGCGTTGGGCATCCGTACTTTCCAAGTGGTCACGCTGAAGAAGATGATGGATATGGGCCTCCAATTATGGGACCACCTTTAAGAAATACATTTGGTTATTCAAACTTAgaacaaagttttcaaaattatccaGGTGCTATGAAGTTCGGTTATGGAGGAAGCATTGGTCATATCGGTGGCCTTGAAGTTAACGGAATTCATTCAAACTTTGCTTATAAGtcaaagattaaaaagaagaaaaacaaaaaacaagtcaAAGGAAATGTGCGACAAGATATCGCAATGCCAGATGAGCAAGCGATGATGGATGTTACGAAGCAACGACAGCTAATTGGATCTCTCGGCGCAAGCACATTATTTAGCGATAACGTAGGTGGAATGGGACTTGGCTATCCAGGAATACCTGGAATGTCATCAGGAATTTCTGGTATACCTGGAGAATATGGAGGAAATGGAGGATACGCTCATGGATGGGAAGGTCATGGAACTGGTTTACATCCTCATGGCTACAGTAACTACGGCGATGAAGAAAGTCACGGAGGTGATTTTGGAGGTTTCGGAACCCATGAGGAGTCACATGAAGGAGGATATGAAAGatcatttgatgaaaatgCTGAGCGTGAAAACCAGCAAAACCATGAACAAGaaGTAAGTCAAAAACGTGGTATCATCTACTCTCCAGCAGAAAAACAAGAAGACCGAAATGCTGCACAACTTACACCTTCAAATACAGTTGAAATCCCTGCTCAGGATCTGGACGACATTAAGTACTTAACAAATATAGATCGCCGACAAACCCGTTATGTCGGTCATTTGCCCAACCATTTCCCTGAAGATAACTATAACGACATGCAACATTTAACAAGGTACAACACTAATTTGGACCACGGTGAccttaatttttatcaaccaCGACATGTACATATTGGCGTTGGAACTCCAAATGTAAAAGTTGAAGTAGAAACAAGTAAATCAGAGATAGCTCAAAATCCTAGTGCGCATGTGTCATTCCAAAAAATGAGCGAAATCAGGAAGCTGGTTCACGAGGTCTctgattctttaaaaagaacaaacatCAAGCTAAACGCCCTTAAGAAAAATCATACGCCAATATCCTCAGGTGGTAAAAGACAAATTACACCAGCATATACACCGGTAGTTGCTGAGCCAGTCGGTGTACCTGATATTCGatatcCAGTTCCAGCTGCTGATCGGTATCCTCTTGGAGCAGGATATGTTTGGCCATCAAGAAACTATGGACATCATCACCATGGAGGTGCAGGGCACATGACATGGAGCAAATCTCATACGcctaaagtaaacaaaaaaaatacagacaATGAGGAGACTACAGGAGAAAAAGACtcgaaaaaaaatacacaagaaaagaacaaaaaattaaagcacaAATCAgaGAAACATCGACGATCAGTGTCttccaaaaccaaaaaacacgAACGAGTTGGATCAAAAAGACAATTTCTTGAGCATCCAATGAACTTTCCACATGATTCACCAGTCTATGGATATGGGATGGGTTATCCAGTTCGCAGCTCCGGATTTATTGGACACGGCGGGATGGGTGGTTATGGAGTAGGCCACTATGGTCATCGTTATGGTGGGCATATCATGAGAGGAATAGGAGGTTTTCATAACGGTGGTGGATACAATGGATATGGAGGTCACTCTATGGTTATCCATAACCCTGTTCACATTATGAGTTATGGTGGAAATGGTTATAATGGAGGTAGTGGGTATGGAAGAGAGGGTGCTATGATGGATAGTTTGCCTATACATTCCAGTCCGTTCCCTGGTTTGACACATTCAGCGGAAGGGTTTGAAGGTCATCATGGCGGTATAGGTGGCGGCTACTATCCTGGTCTACATGGTTTTGGTGGCATTGGAGGTATTGATGGTGGTCATTCAGTTGGTGGGGACTCCTTTATTGGCCCTCCACCAACTCATGGTTCAGGAGATGGTTATGGATTTACAAATGGTGGAATTGGTGGAATAGGTGGAATTGGAGGAATAGGGGGTTATGGAAATGGTCATCAAGGTTTTCCTGGAGGATTAGGTGGAAGTTTGTATAGCAACTTTGGGGGCTTTAATGGATTTAATGACTTTAGTCACGGAAACGATCACAATGAACTTCAAAGTCATGGCTCAGGTATGGGGTTAGATCCTGGTATGTCCACAATGGGTGGTGATGTTATGCATTCAATTGGAATGGGTCATCCAATAGGGTTAGCAGTATCTCAAGGGGTTCCAGGAGGAAATGCCggattaaatttaattggaGGAGCGGGAGAAATAGGAGGATCATTGCCTATTAGTGGAATGTCAGGAACTGATATTCAAGGAGGACTAGGAGGTATTTTACCATATGGTGATCATGGTAGTGATCAAGGCGGATATGCTGGAGGAGAAAATGGTCTATCAGGATTCGGAAGACAAAatattGAAACAATGAGACAAGGAGATCAACCAGCAAGTGATCCTAGTGGGTATTTTCCAGGAATGGGACACGCAGATAATCAAGATCAAATGAATGGATCACCGATGACATCTGATTCTCGATCTTCGATGTTTTTTCCTGTAAGGGAGgCAATGACAACTTATGGATCTGATCTACGAGCTATGGATTATCCAGGTGCTAGCAAAAAGTCAGAAGTTCCTCAACTGAAGAAGttgaaaagaaagaacaaagaataa

Transcript

BRAKERKRET00000001334

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010719 (this species only)

Pfam domain

No Pfam domain signature was detected for BRAKERKREP00000001334.1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR027080 all species →	Family	Protein Unc-13	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10480 all species →	PROTEIN UNC-13 HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005516 all species →	Molecular Function	calmodulin binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007268 all species →	Biological Process	chemical synaptic transmission	Interproscan
GO:0007528 all species →	Biological Process	neuromuscular junction development	Interproscan
GO:0016081 all species →	Biological Process	synaptic vesicle docking	Interproscan
GO:0016082 all species →	Biological Process	synaptic vesicle priming	Interproscan
GO:0016188 all species →	Biological Process	synaptic vesicle maturation	Interproscan
GO:0017075 all species →	Molecular Function	syntaxin-1 binding	Interproscan
GO:0019992 all species →	Molecular Function	diacylglycerol binding	Interproscan
GO:0030672 all species →	Cellular Component	synaptic vesicle membrane	Interproscan
GO:0031594 all species →	Cellular Component	neuromuscular junction	Interproscan
GO:0035249 all species →	Biological Process	synaptic transmission, glutamatergic	Interproscan
GO:0042734 all species →	Cellular Component	presynaptic membrane	Interproscan
GO:0043195 all species →	Cellular Component	terminal bouton	Interproscan
GO:0061789 all species →	Biological Process	dense core granule priming	Interproscan
GO:0098831 all species →	Cellular Component	presynaptic active zone cytoplasmic component	Interproscan
GO:0099525 all species →	Biological Process	presynaptic dense core vesicle exocytosis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKREP00000001334.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000001334.1 across 29 RNA-seq samples of Hydra viridissima. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

0TPM > 0

7Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole body	18	0	0.00	0.00
Whole	6	0	0.00	0.00
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	0	0.00	0.00
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	0	0.00	0.00
symbioic hydra M9 strain · symbioic hydra rep1	1	0	0.00	0.00
symbioic hydra M9 strain · symbioic hydra rep2	1	0	0.00	0.00
unannotated	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.