Gene detail

Detailed information of BRAKERKREP00000001453.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: XP_047136804.1, protein shortage in chiasmata 1 ortholog [Hydra vulgaris]
Species abbreviation HVIRI · all data for this species · gene families

Sequence

CDS

BRAKERKRET00000001453

atGGAACCAATGGAAGTTGATACTCCAAACAACAAAAGGCTGGAATCTCCCATTTCAGATGTCAATAGCATGTTCTGTAGTTTTCTGGAACTTCCTGACATGTGTCTACAATTAGAAGAATTGACTAACGATAATTtaaccATTCTAACACCCAGCTCAAGAATGAAAGCTGAGCAGAGTTTAAGGGAGGCTGATAAAAGATATgatgaaatattattactattacttcCTGTAATTGATGAGCCTGTTGTAATTTGTGACAACTTTCCATTGTTTCCAAACATACTTAAAGAAAGGTACCTAAACTTAAGTGAGAATGAGTTTACTCTTGATTGGGATCCAATGTCTTCTTTTAATAAAGAGATGAAACTAGCAGAGGAATCAGTTATCACTGTTGCACACAGGGAAGATGCATCCTTTTCTTTCCATTTCACTTTTAACaaagacattttttctaaagaagGTGATGACAAAGTGATGAACTGgaaatttaaaggaaaaatatttccatcCTTACAATATTTAACATCATACAAAAATGAAGATGCAAAATCCACTAATAACCAgccatttatttcaaataaagataaagCAGCCATTGATTTAAACCATCTAAAAACGCAAGTAGAAACAACTTTCTCAAAAGATTCTGTTAAAATGATGTGCAGTACTCCTAAGGTCTACCAGTCCCCTTTAGATTCATTTATGATGTTACGAACAGGGCGTTTTGACCCTTTACCTTCAACTAAGAAAGTAAAAGCATTTGTAAAACCGGttattactACAGTTAGTGCAGCAAAAGTTCAACCTATGTGCAGgggaaatgaaaaaaatgatttgttgcAAACAAATAAATCATCTCACAATTCAACCAATTAccaagaaatgaaaaaaaatcataattttgaGCAAACTAAAAACTCCTCCTTCAATATTTCTAAATCAGCTGACTTGGAGAAAgcttattttgtaaaacaccagataaaaaacaaaagtggtTCAAGTGATTTTTGTCTAAAAGATTCATTTTGTGAACAAACTACTATGATTGAGTCTAAATGCAAAATAAGAGTTTTAGATGTTCACTTGTCAgcagaatatattttaattctaaatgcTTTAGAGCATGACTCATGGTCagttttacaagttttaaagaactttcatCTTATTGACAAATccatttactttttcaatatttcaccTGACTTTTCTcggtttcttttaaaacaggaagaacaaaatgttgaaaaagATGCAGATATCTTTTGTAGCATTTGTATTTTGCATGGATTAGTTCAAGCTGCAAATCTGGTTGCTAATTGCAGTATTGAAGTTGCCTGTAGTGTTCTGAAAGGTTTTGGAGTGGAAAAGAAAACCATCCTAGGGAACATTTTAGTACCAATACAGCAAAAGCTGGCTAAATTTCACTGCCAATATGAAGAAGCTAATATTTTCCATCCTAAGTTTATTGCTATTTATAAACTTGTTATCAATTGGTTGAGGTGTGATTTCCGTAGCAAAATTCTTATTCTTGTTCATCGTTGTTATGGTAACCTTTCTCATAGACTGAAGGCTTTCCTTGATACTGACAAATCTCTAAGTGTTGACTTTTACCCACACAAAAATGTATGTGAGGTAGAATACATGAGTAGATTCACAGatgcaaatattattttagctGCTGAGAATGAGGAAATGCTGTCATGTCCTTGGGAATATTTCCAGTATGTCATACAATTTGAGCATCGATTAGAATCTCATTGGCATGAAATAGTCATTAAAAGTAATCCAGAACTTCGACAATTTGTTTCATTGAATGTCTTAGTTAGTTCTTCACAAGAAAATGTTGTGAATGCtgaaatatttccttttaGCAATGATGCAATTCATGTCAACAAAAGtaaagataaaagtgttgTCAATAAATTAGATGTTCCTTTTCCTACAAATCCAATCTCAATATATACACAACACTATGTGCTGTGTTGTAAAGATGCAGTGAAAGACAAAGATCTTCTCATAACATTAGAGAGCAAGGAAAATGTTATTGTTGTCACAAAAGACTATGCCAAACTAAAGAATTTCAcagatttttactttcatcCTGACATTTTATTAGATGAACGAACTGGGGTTCTTATTTTGGATGCTAATAATTCAGTATGTGTTATGGAACTTGAAGTGAAAGTGCTATCATTAGTACTAAAGTGTTCATCTTCTCATATTATTCTAACTAACTATTCAAATGGATTGGGTTCTACCATCATTTTCTCACAGATTATCTCGATAATTACAAGAATTACACAGATGTTCAAGGTTTCAGTAAAGCTTCATCATGTATTTTCTGTCCAGCAATTAGCCTCACTTATACGTCTTTTATGTGATAGCGCAAAACAAGCATCTACAATTTGGGATAATGACCAATGGATATCAAGGCAGTGgataaaagaagatttttctaagGAAGAAGAATTCTTACTTTCTTATCCATTCATAAATtcattttgTGCACAACTAATACTAAAAGTAATTGATTCGCTTTCAACTTTACTTCAATATTCTCTTCTTGACTTGAAAGAGTTGCTAAAGTGGATTCCGCAACATATAATAGTGGCATTTTACAATGCAAGTCACAATGCCGAGACATTAAATCATCAAACAAGATCTGATTACAAGTTGGATGGTATTCAAAAACATGACATAACACTTGATTATCCAATAGATAATGGTCCAATAATTAATACAATATCTAATAACCTGTTAGATAATGTTCCAATAAATGATCTAAGGTCTAAATACTACTTACCAGGTAGCAGTTCAAATCCTGGTTATTCTTTACTAAATGATActccaataaaaaataaaatgagcaGAAATTATGATCAAGCTTTACCTATAATGCCACAGCATAAAAATgtgaagttaaaaacaaatttttcagaaaagattCTTGAACCTTGTTgtcttttaaatcttaattcTGATTATCATTCAAATGCAACAACTCCAATCACATTTAGAACCAACCAAACTTCTAAGAAAATACATGAATCAGCcacaaaaacaagttttccCAACTTTGATGATAGTCATTTAAATGACTCTAAAAGGTTTTGTTCTAACACACAAAAGTGGACTGCTGGTCAGATTGATGTTGATAAATTACAAACATttccattaaaatgttttacagagAAAGAGTTTGATAGTAATCAAAAAATGCATGAGAATTTCAACACTGATCaggaagaatatttttcaaacagcaCTATGAAACACAGTTCAAAGCTTTTCAACCAATCTATTGATTTATGTTCAAATTCTGACAGTAACTATTTAAATGAGGACATACAAATACACTCTCCAAATTTTCCCTTTATTAATTcaacttcaaataaatatcaatcaaATTGCTATCAAGGTGGGAGTTTTAATAGAAATACAAAAGatagttttttagttaaaaactgTAATATCAAGTTCAATAAACCATTATGGAGTCAGCCAAGCAATATTAGTAAACTCCCCAGACAAGCAGTAAAGGCAATCCAAGTTcaagataagaaaaataacaatgacCCACAGGAAATATCTTTACATCTACCTCCTACTTCaaaagagcttttaaaaaacaaacaaactgaATTTCAGTCATTTAAAAAGGtgtcaaaagaaaattcatcCAATTTTCACTTTCTTTACAACGaagaaTTTCCAAGTTCTCAggttaaaaagaagaaatgcaAGTTATCATATGAAAGAGTTCCTGGTGCAAAAAATGGTCAAACTAGACTTAAATTTCTATAA

Transcript

BRAKERKRET00000001453

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005764 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17825 all species →	DUF5587	Family of unknown function (DUF5587)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039991 all species →	Family	Protein shortage in chiasmata 1 ortholog	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR35668 all species →	PROTEIN SHORTAGE IN CHIASMATA 1 ORTHOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000712 all species →	Biological Process	resolution of meiotic recombination intermediates	Interproscan
GO:0000794 all species →	Cellular Component	condensed nuclear chromosome	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0003697 all species →	Molecular Function	single-stranded DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKREP00000001453.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.