Gene detail

Detailed information of BRAKERKREP00000001682.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: XP_047136971.1, bromodomain adjacent to zinc finger domain protein 2B isoform X2 [Hydra vulgaris]
Species abbreviation HVIRI · all data for this species · gene families

Sequence

CDS

BRAKERKRET00000001682

atgcaacaaattttGTGTTTAGATTGTACTACTGATTTTCCATCAATGGCAGAATTACAAGCATCATTACTTTGTGAATCAGGAAGTGAAGATGCTCTTTATAATGCATGCCAATCTTTACTGATGTTTGCAATCTTTGATCCTGGAGTCTCTggaaaatattcaACATCATTATTGggtgtaaatttaaaagatattgagCTGAATGAATCTAATATTTCTGAAGTTCTGcgcctttttattttatcacgAAATGATGGAAAGCAAGATGAACTTTCTGATGCTTTGATAGAGAAACCTCTTATTGGTTTATCTCCAGCACAAAAAGCTGCCATTCTTGCATTTATCTGTAATGAGCTGCTTTGTGGAAAAGCCATTGGGAgagaaatagaaaaaagtttggaaaatATGGCAGATTTAAGAAGAGATAAATGGATTTTAGAAGGAGAAATGCGCAAgtacaAAGCAGATTTAATGAAGATGAAGCCAAAggataataaaatcaattctGAGAAGAAAATTGAGCAAGGTATTGAAGCTAAGAATGAAGAAGATTATAAGGATTCTGAAGATGAAAAAGAGAGTGATACTGAGTTTCCTGATAATCATTTAGGAGAAGACTATAATGATTCAATTGAAGTAGATgtTAATAACCCATCGACTGttgaagaaatagaaaaaaaggtgaaaCAACTGGAAAAGaaacattttgaatGTCGAAACAAATTGTTACATGCATCTCATAATATTAGAGGCATACATTTAGGTCAGGATCGCTACAAACGtcgttattttgttttgcCCAATGCTGGTGGTGTTTATGTTGAAGGGTTAGAAAGTGGGTATTTCGATGAGagtttagcaaaaaatataaaaaaagaagatgatAAAATTGACGTTAGacctttaaatttgttttcttttaaaagtgataaaCAATCAAATAGTTACTTAACTTCACAACAGAAGTTATCAATCACATTACCAGTTGACCCTCAACCAGCCACTGTGAAATTAGAAAATAGTGacaattttatttggttttcaaTTGCTAAAAAAGCAACATGTTGTGATggaataaaatctgttttttttaaaaatccaactcatacaaaaataattatagctCCTTCTGTTGAACAGTTGGGCCAGGATAAAAAATTCCTGGAATCCATTTATGGAAATGACTTAGCTATCCCCTCTCTTTTACCTAATAGTCAAGTGTCACAAAGTCTTTCTAAAGCGTCTTTATCACTTGGTTTACCTGACAACCTTGATATCAGTAATTTGATAGAAAATCCACAGAAAGTTGCAGAACTTCTAGAATTCCAGAGTGCAGTTGCACAAGAAATTCCtacagaaatgaaaaatgggTGGTGGAGAATTACTGATCATGATCTTTTGCAACAAATTACTTGTGCTGCACATCAGAGagGAATGAGGGAGAgattgcttcaaaaaaatgtgtcTCGTTATGCAGACTATATTTCACAATCATGCAAGAACAACAACCCTTTTTtttcaCTAGTATTTCCAGAAGATGAAAAGGAAGCAGGTAAAAGTCATCAGTCTACAACAAATCTGTTGGTGTGTGACTCTTGGTTTCCTCAACTAGCATATGCAAGTGATAAAGCTGTTTTAATTGAGGTTGAGGAACTAGAGGAGAAAGTGTTTTCTGCAAGTTTACAAGCAAAGagttgGCATTTATCTCAAAAAGTTTCACCGTCACTTCAATTCTCTAGTGATGAGAAGgcagttaaaaatgaaagtctTTTGAAGATAGCAAGCTCACATTTACTTGCTCTTGAGGCAGGAATAGAGCGTCGTTATCTTAAACATCCTTTCCGTCTGGAAAAACTTCCTAATAAGAATGAAGAAGAAGAGAGTTTAGTAAGTTCGAATTGCCAACCAACAACACCAGCACTTAAATTATGGAGAGATGCTGTAACTGAAGCTAGATCTTGTTCACAGCTCTCAATGTGTTTATCAATGCTGAATGCATGTATTGCTTGGGAAAAGTCAATCATGAAAGTGttttgcattttatgtCGTAAGAGTGATAATGAAGATCGCTTATTGCTCTGTGATGCTTGTGATCGCGGCTGTCATATGTACTGTTGCAAGccTAAGTTAGAATTAGTTCCTGATGGAGACTGGTTTTGTCCTGAATGTGTATTAATGgCATCTGGTAGTGATCAATGCTATTCTTGCAGAACAAAAACTGGGAAACGAATAAAGTGTGCTTTCTGTCCGAGATACTATCACCTGCAGTGTCTTGAACCACCCCTTAAcaaGTCTCCTCGCTCTCCATGGTCTTGTCCCATTTGCAAAAAAGAGCgtctaaaaagtaaagttcCTTCCAAAAAAAAGCCTCGGATTGAACAGCTTGTCATCGAAGAAGAGCAAAGAAATAAAACGAAGCAACCAAAAGATATGGAGCTctgtaaacaaatattaacagAACTAGAGAACCATGATCAAGCTTGGCCTTTCGTTGTGCCTGTCAACAATAAACAATTTCCTGAGTATTACCAAGTTATTAAACATCCCATGGATTTTCAAACCATCGAAGCAAAACTTAGAGAAAATCAGTATAAAAATCGAGAAGAGTTTGCTCGAGACGCTCGtcttgtatttaaaaactgcaatACATTTAATGAAGATTTCTCCGAGGTAGGTAAAGCAGGAAAGATCATGTCTCGATTTTTTGAGAAACGCTGGTCTGATTTATGCTCCAGTGAGAGGAAGCAATCGCACGTtactaagaaagaaaaaatattcaatgacGCTCGAAAGCCCTCTACACTTGCCGGTAAAATAGAATCATCGCTTAGTGGGGACAGTAGTAGTGAAGAAATGTCGATCAGTGAATCTGAGAGTAGTGAGATTGAGGATGGTAGTGATGATGATTAA

Transcript

BRAKERKRET00000001682

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A2AUY4	Bromodomain adjacent to zinc finger domain protein 2B OS=Mus musculus OX=10090 GN=Baz2b PE=1 SV=1
Q9UIF8	Bromodomain adjacent to zinc finger domain protein 2B OS=Homo sapiens OX=9606 GN=BAZ2B PE=1 SV=3
B7ZS37	Bromodomain adjacent to zinc finger domain protein 2A OS=Xenopus laevis OX=8355 GN=baz2a PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002096 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15612 all species →	WHIM1	WSTF, HB1, Itc1p, MBD9 motif 1	Motif	Interproscan
PF00439 all species →	Bromodomain	Bromodomain	Domain	Interproscan
PF15613 all species →	WSD	Williams-Beuren syndrome DDT (WSD), D-TOX E motif	Family	Interproscan
PF00628 all species →	PHD	PHD-finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028942 all species →	Domain	WHIM1 domain	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR001487 all species →	Domain	Bromodomain	Interproscan
IPR028941 all species →	Domain	WHIM2 domain	Interproscan
IPR019787 all species →	Domain	Zinc finger, PHD-finger	Interproscan
IPR036427 all species →	Homologous_superfamily	Bromodomain-like superfamily	Interproscan
IPR001965 all species →	Domain	Zinc finger, PHD-type	Interproscan
IPR018359 all species →	Conserved_site	Bromodomain, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45915 all species →	TRANSCRIPTION INTERMEDIARY FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000790 all species →	Cellular Component	chromatin	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKREP00000001682.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.