Gene detail

Detailed information of BRAKERKREP00000001747.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: XP_047136802.1, CWF19-like protein 1 isoform X1 [Hydra vulgaris]
Species abbreviation HVIRI · all data for this species · gene families

Sequence

CDS

BRAKERKRET00000001747

atgaacggCTCAAGTGTTCTTGCAAAATCTTTACATATGCAAGGAGTTGAGTATATGTTTGGAATTGTTGGCATACCTGTAATAGAGGTTGCTGTTGCTGCTCAACAGGAAGGTATTAAATACATTGGGATGCGGAATGAACAGGCTGCAAGCTATGCTGCCTCAGTTGTTGGATATCTTACTCAGAGaccaGCAGTTTGCTTGGTTGTTTCAGGTCCTGGTTTGATTCATGCACTTGCAGGGATGTCTAAttctaaagaaaattgttgGCCTTTGATAGTGATAGGAGGTTCAGTGGATTCTAATCAAGAGCAAAAAGGAGGATTCCAAGAGCTTCCCcagGTTGAATTAGCTCGACCATATTGCAAGTTCAGTGCACGCCCAAATTCTGTTGAAGATATTCccttttttgcTGTTCGAACTTGTTTACAAGGAAGACCTGGTGTTTCTTATATTGATATGCCTGGAAATATGattagcaaaaatgttttagatgaTGAGATTTTatggTGTAAAAGATCTCCTTTGAGATTTATTAGCTGTTCTCCCCAAGTTAAAATTCAAAGTGCATTGAGTTTATTGTTAACAGCACAGCGTCCTTTGATCATTATAGGGAAAGgtGCTGCATATGCAGATGCAAGCAGCGAGCTGACAGAATTTGTCAACAAAACTTCCTTACCATTTCTTCCAACACCTATGGGAAAAGGAGTAGTATCTGATCTTCACCCTCAGTGTGTAAGTGCAGCAAGATCAAGagcTTTACAGAGAGCTGATGTAGTTTTTCTGGTTTGTGCTCGACTTAATTGGATGTTGCATTTTGGCTATCCACCTCGGTTTAATAAAGATGTTCAAATCATTCAATTAGATATTGCTCCTGAAGAAATAGGTAATAATGTTCAAGCAAGTGTTGCTCTCTATGGTGATGTTGTTACAATAACACAACAGTTAGATATTGCTCCTGAAGAAATAGGTAATAATGTTCAAGCAAGCGTTGCTCTCTATGGTGATGTTGTTACAATAACACAACAGCAAACAATTAAAATGGCACCTTTGAAAATattaGTTTGTGGAAGTGTTAATGGCaacttttcaaagttttttaaacgtaTAGggaatgttaacaaaaaaaatggtcCATTTGAGaTGGTTTTATGCACTGGAAATTTTTTCTCTGCCAATCCTCAATCCATAGAAAATTGGAAACAGTTTCTTTTAAGCAAATCAAAAGTTGAAGTTCCAGTATATATACTGGGACCAACATCAAAGCAGCTTGAAGTTTTCTATTCCAAGGAGAAGTTAAAAGATGGGGAGgaactttatgaaaatgtcTTATATCTTGgtaaaaaaggAGTTTTCACAACAGCTGCTGGTCTAATGGTTGCTTATTTGAGTGGCCTTGAAGAATCTAATAATTCTTTGCATGCAGATGTTTCTGCTTTAAATGAGCAACTTCTTAGAGATGATAAATTTATCGGAGTTGACATTCTGTTAACATCATCTTGGCCAAAAGATGTtaataaatacacaaaatCAACGCTATCATCAGGGAATGAATCTCCTTCTGTATCGTTTCTGGCTGCATCACTGAAACCAAGATATCACTTCAGTTCTCATaacgaaaaattttatgaaaggCAACCATATAGAAATCACAAGGTCTTGAGAGGTAGTTTACAACATGTTTCACGTTTCATTGCTCTTGCTCCATCATTTAACGAAATCAATGAAAAGTCAATATATGCTTTTTCGATTGAGCCATTGTGCTACATGGTACGTGATGATCTTATCAAACAACCTCCTGATACAACTGAGTTCCCATACGATGATGTTAAATTGAATCCCATAGAAATTCAGAAAACAGAGCAGTTTTTCTTCAGAGAAGATCTTAAGAGAAAAGGAGatGCCGGGGGGCAGAAGCAACATAAAGTCCCTAAAGGACCACcaaccCTAACAAGTGATTGTTGGTTTTGTTTGGGCAGCAAAGACGTTGAGAAGCATTTGGTTGTGAGTGTTGGAGAAACAACTTACTTAGCAGTAGCGAAAGGCGCTATTAACAACGATCATCTCCTTGTATTACCGATATCTCATCATAACTCTACTGTAGTTCTCCCTGATGATGTTCGATTGGAGTTGGAgaatGAACAGAAATCTATAATCTCCTTTGAACGGAATTTCTACACTCAACATTTACAATTGCAGgTTGTTGGAATACCTTTTGATCTTTGTGGGGAAATAAAAGATACATTTTTAGATCTTGGTCAATCAAGTGGGATGGATTTTATTGAGATTCCGGCAGAAAAAGATCTTCGTGAGaTGGTGGCGGTGACAACTCCGTATTTCTTAGTCGAACTGCCCTCTGGGGAACGGCTGCTGCATAAAGTAAAAGGAAGAATGCCACTTCATTTCGGAAGagAGGCGTTGACCAGTCCTTCACTGTTAAATCTTCCGGATCGTGTTGACTGGAAAGAATGTAAACTTTCTAAGGAAGAAGAGTCTACGTGCGCGAACAATCTGCGAAAAAGATTTCAACCTTACGACTTCAATTTTGAATAg

Transcript

BRAKERKRET00000001747

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8AVL0	CWF19-like protein 1 OS=Xenopus laevis OX=8355 GN=cwf19l1 PE=2 SV=1
Q8CI33	CWF19-like protein 1 OS=Mus musculus OX=10090 GN=Cwf19l1 PE=1 SV=2
Q5RGJ5	CWF19-like protein 1 OS=Danio rerio OX=7955 GN=cwf19l1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003765 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02776 all species →	TPP_enzyme_N	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain	Domain	Interproscan
PF04676 all species →	CwfJ_C_2	Protein similar to CwfJ C-terminus 2	Family	Interproscan
PF04677 all species →	CwfJ_C_1	Protein similar to CwfJ C-terminus 1	Family	Interproscan
PF00205 all species →	TPP_enzyme_M	Thiamine pyrophosphate enzyme, central domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012001 all species →	Domain	Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain	Interproscan
IPR006767 all species →	Domain	Cwf19-like protein, C-terminal domain-2	Interproscan
IPR045025 all species →	Family	TPP-binding domain containing protein HACL1-like	Interproscan
IPR036265 all species →	Homologous_superfamily	HIT-like superfamily	Interproscan
IPR029035 all species →	Homologous_superfamily	DHS-like NAD/FAD-binding domain superfamily	Interproscan
IPR029061 all species →	Homologous_superfamily	Thiamin diphosphate-binding fold	Interproscan
IPR006768 all species →	Domain	Cwf19-like, C-terminal domain-1	Interproscan
IPR012000 all species →	Domain	Thiamine pyrophosphate enzyme, central domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43710 all species →	2-HYDROXYACYL-COA LYASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030976 all species →	Molecular Function	thiamine pyrophosphate binding	Interproscan
GO:0001561 all species →	Biological Process	fatty acid alpha-oxidation	Interproscan
GO:0005777 all species →	Cellular Component	peroxisome	Interproscan
GO:0000287 all species →	Molecular Function	magnesium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKREP00000001747.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.