Gene detail

Detailed information of BRAKERKREP00000001809.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: XP_002157954.2, zinc finger HIT domain-containing protein 3 [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9CQK1	Zinc finger HIT domain-containing protein 3 OS=Mus musculus OX=10090 GN=Znhit3 PE=1 SV=1
Q15649	Zinc finger HIT domain-containing protein 3 OS=Homo sapiens OX=9606 GN=ZNHIT3 PE=1 SV=2
Q6UIM2	Zinc finger HIT domain-containing protein 3 (Fragment) OS=Pan troglodytes OX=9598 GN=ZNHIT3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008184 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21373 all species →	ZNHIT3_C	Zinc finger HIT domain-containing protein 3, C-terminal domain	Domain	Interproscan
PF04438 all species →	zf-HIT	HIT zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007529 all species →	Domain	Zinc finger, HIT-type	Interproscan
IPR051639 all species →	Family	Box C/D snoRNA	Interproscan
IPR048371 all species →	Domain	Zinc finger HIT domain-containing protein 3, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13483 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000463 all species →	Biological Process	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0000492 all species →	Biological Process	box C/D snoRNP assembly	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0048254 all species →	Biological Process	snoRNA localization	Interproscan
GO:0070761 all species →	Cellular Component	pre-snoRNP complex	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23309	ZNHIT3; zinc finger HIT domain-containing protein 3	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000001809.1 across 29 RNA-seq samples of Hydra viridissima. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

9TPM > 0

7Conditions

9.4Max TPM

2.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole body	18	1	0.48	8.65
Whole	6	5	6.25	9.40
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	1	7.38	7.38
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	1	5.20	5.20
symbioic hydra M9 strain · symbioic hydra rep1	1	1	4.83	4.83
symbioic hydra M9 strain · symbioic hydra rep2	1	0	0.00	0.00
unannotated	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977	8.65
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397	9.40
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397	8.58
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397	6.62
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397	6.60
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397	6.31
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397	0.00
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902	7.38
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902	5.20
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902	4.83
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902	0.00
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636	0.00

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.