Gene detail

Detailed information of BRAKERKREP00000001864.1 in Hydra viridissima

Genomic Location: QPEY01000005.1:1820825...1830158
NR annotation: XP_002154954.2, xylosyl- and glucuronyltransferase LARGE2s [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERKRET00000001864

ATGGTTAGAACATGTCGTTTTAGTAAGCTCATCAACATATTGGTTTTCTTTTCTGTATCATGCTCTATGTTGTTGATTCTATGGAGCTCAAATCTTGACAAAATAGTGAAGAAAAGTGACAgactaattgaaaaaagtaatgAAGCCTACAACGATGatgaaaatgtattaaaatttcaaaccaCATTCCATTTTTCTGATCCTTTACAAAAGGAAGGTAAACTTGCACTTgatcaaatcaattttttaaagaaagagttACAGTATAATCAGCAAATCATTAGTGAGTTAAAGCAGCAACATGCTAAAGATGACAAAAAAGATTGCAAATCTTATGGATTGCCCAATTGCCAGGTGATCCATATTGCAATTGTATGTGCTGGTTATAAAGAAACTCAGCGTGTTGTAACACTCATCAAATCCATACTGTTCTATCGGCGACATCCTCTTCATTTCCACTTTATTTCAGATGTAAGCGGAAGACATGTTttgcaagttttatttaaaacttggaTGTTAAAGCAAgttgGAGTAAGTTTCTATGAtgctgaaaaactaaaagcaGATGTAGATTGGATACCTAATACTCATTATTCTGGAGTCTATGGGCTAATGAAGTTGACTCTTACTAAGGCCCTTCCAGAAATATTAAGCAAGGTCATTGTGCTGGATAcagatgtttttttcttgacaGATTTAGCTGAACTTTGgagtttgtttgaaaacttcaCTAGCTATCAGGCAATTGGTTTGGTTGAAAATCAGAGTCAATGGTACACTGGCaaactttggaaaaaatataaaatatggcCTGCTATAGGTCAAGGTTTTAACACTGGTGTGATGCTGTTTGATTTACAGAAGTTGCGTAAAATTCAATGGGCCCATCTTTGGCGCATGACTGctgaaaaacaacttttgagTTTGCTCTCTGCTGTTCTTGCTGATCAAGATGTTATTAATGCTGCATTGAAAGACAACCCTCAAATTGTTTACAAACTACCATGTCAATGGAATATTCAATTGAGTGATAACACAGAGAGTGAATATTGCTATAATGAACAACTTGAACTTAAAGCCATACATTGGAACTCACCTAATAAACACATTGGAAGCAAACACAAACATGTTGACTATTTTCGTAACATGTATCTTACTTTTCTTGAATACAATGGAAACTTGCTTAGaaaaaatgtgttttccTGTCACATTCCTGGTGAAAACATTACAGccattaacaaagaaaaaaaactatcagaATATGATCAATGTTATGATATTCAAATGGAGCAGTCAATGACAAGGCGTGTTCATTTATTCTATATGGATTATGACTACAAGCCTGATGATGGAGATGTAACATTGGTGACTCACTTATCAATGGATAGATTACAGATTTTAGAGTTATTGTCCCAGCATTGGGAAGGTCCAATGTCTATTTCATTATATGCATCTGATGCAGAAGCTCAACAGTTTGCACGTTTTTCATCTGTTTCTAATTTTctgaagaaaagaaagaacatAGGGTTGCATATTGTATATAAGGATGGAGATTTGTATCCTGTAAATTACTTACGAAATGTTGCACTTGAACATGTACAGACCACCTATGTTTTTCTTACTGATATTGATTTCTTGCCTATGATAGGATTGTACAACTACTTAAGAGATCTTGCAAAAGATACAGATATGGAGAACAaggCTGTAGTTGTTCCTGCTTTTGAAACATATCAGTACAAACTTGATTATCCTCAAACTAAAAAGCAACTAATCGATTATTTGGATTCACAAAAAGTAGATACTTTCAgGGGAAAAGTTTGGCCACAAGGTCATGCTCCTACTGATTTTAATCGCTGGAAAACAAGCTCAAGTAACTACGAAATCCGCTGGCAGGTGGATTTTGAACCTTACATACTAGCTAAGAGAAATGGTCTTCCTCTTTATGACATGCGTTTTGTTGGCTTCGGTTGGAACAAAGTGTCTCATATAATGGAGCTTCACGCATTACGGTTTAAGTTTGTTGTAGCTGCAAATGGTTTCATTATTCATATGCCGCATGCTCCATCATTTGATATAACTAAATATCGCTCAAGTAGCCAGTACCGTAGGTGTTTACGTCTCCTTAAGCAAGAATTTGAGTATGAACTGAAACAAAAATACGATGTCAAGTTTCTGTAA

Transcript

BRAKERKRET00000001864

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q66PG1	Xylosyl- and glucuronyltransferase LARGE2s OS=Danio rerio OX=7955 GN=large2 PE=2 SV=1
Q66PG2	Xylosyl- and glucuronyltransferase LARGE1 OS=Danio rerio OX=7955 GN=large1 PE=2 SV=1
Q66PG3	Xylosyl- and glucuronyltransferase LARGE1 OS=Gallus gallus OX=9031 GN=LARGE1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003897 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13896 all species →	Glyco_transf_49	Glycosyl-transferase for dystroglycan	Domain	Interproscan
PF01501 all species →	Glyco_transf_8	Glycosyl transferase family 8	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029044 all species →	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan
IPR051292 all species →	Family	Alpha-1,3-xylosyltransferase/Beta-1,3-glucuronyltransferase	Interproscan
IPR002495 all species →	Family	Glycosyl transferase, family 8	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12270 all species →	GLYCOSYLTRANSFERASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015020 all species →	Molecular Function	glucuronosyltransferase activity	Interproscan
GO:0035269 all species →	Biological Process	protein O-linked mannosylation	Interproscan
GO:0042285 all species →	Molecular Function	xylosyltransferase activity	Interproscan
GO:0016757 all species →	Molecular Function	glycosyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09668	LARGE; glycosyltransferase-like protein LARGE	EC:2.4.2.- EC:2.4.1.-	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000001864.1 across 29 RNA-seq samples of Hydra viridissima. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

13TPM > 0

7Conditions

35.4Max TPM

6.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole body	18	4	1.81	10.64
Whole	6	5	11.61	17.15
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	1	17.29	17.29
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	1	17.11	17.11
symbioic hydra M9 strain · symbioic hydra rep1	1	1	22.37	22.37
symbioic hydra M9 strain · symbioic hydra rep2	1	1	35.44	35.44
unannotated	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977	10.64
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977	9.43
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977	6.98
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977	5.46
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397	17.15
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397	13.84
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397	13.78
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397	12.70
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397	12.20
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397	0.00
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902	17.29
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902	17.11
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902	22.37
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902	35.44
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636	0.00

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.