Gene detail

Detailed information of BRAKERKREP00000001893.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: XP_002161377.3, fatty acyl-CoA reductase 1 [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

BRAKERKRET00000001893

ATgagtttaacatttaaaagtgtCACAGTACCACAGTACTATGCTggtaaaagtgtttttttgacAGGTGGAACTGGATTTATTGGCAAAGTTTTGGTTGAAAAGTTATTGCGTGGTTGTCCTGAcattaagaatatttactttatgatTCGTCCAAAGAAAGGAATGTCTTGTGAAGAAAGGTTAACCAAAGTCCTAAAGTGCCCGcttttcaataaattgaaTGCAATAAATCCTGATGCTATTAATAAGGTGATTCCTATCCCAGGAGATGTTGTTCATAAAAGCCTTGGTATATCATGTGATGATCGCAAACTTCTCCTTGAAAATGTTGAGATAATTATACACTCAGCTGCTACTGTTCGATTTGATGAGCCAATCAgagttGCAGTTGAAATGAATGTCATAGGTGTTATAGAAATGCTTAAATTAGcagaagaaatgaaaaagctGGAgGTTTTTTGTCACATTTCAACTGCATATTCACAGTGTAACCAAAAGAAGGATTGTGAAATAAAAGAGCAATTTTATCCTGTATCAGTAGAAgcagaaaaaattatcagcATCTTGGAATGGATGACAGATGAAATGTTGGCCAGCTTTACAAAACCTTTGCTTGGAGATTTTCCTAATACATATACATTTACCAAGTCTTTGGTTGAAGATTACTTAAAACGTAAAGCCAGTCATTTGCCTTTACTTATTGTGAGACCATCAATTGTTACAGCATCTCTTTCAGATCCATTTCCgGGTTGGGTTGACAACTACTATGGCATAAGTGGGGTGATTGCTGCTgTCGGAAAAGGAGTTCTTCGCACTCTCCATGCTCCAAAGGTTAAAAATGACATGGTTCCTGTTGATTTGGTATCAAATTGTGTTCTATCAGCAGTCTGGTATTATGGTGTAAGTCAAAATTCTCAACCCTTGATATGCAATTGCACCTCTGGTAATGTAAATCCATCCTATTTTGTAAACATGGATAAAACATGCACTGAGTTCTTAGTAGAATACCCTTTTAACAGCATTGTTCGAAGACccaatttctctttttctgCATCAAAGTTTATGAACCGCTATTGGCAAGTTATTAGTCATTACATACCAGCTGTTTTAGCAGATGGATTATCTATTCTTGTTGGAAGCAAaccaaagtttatGAGCTTGTATCGTTCTATAGACAACAATTTGTCCATCCTGGAGTTCTTCATCCTCAATGAATGGAAGtGGGGAAATCATGAATTCAATCAAATTCTTAAAGCTCTTCCAGATGAAGACCGTGAAaattttgacTTTGATATGAGAAAGATTGATTGGGAAAAATATTACCAGTCGATAACGTTAGGTGTAAAACTATATTTGGTGAAAGACGACTTGAAAGAGTTACCCAAAGCGAGGCAACTACACAAAagGTACAAGATGGTTTTTGTATTAGCAGTTCATTATAACTTTAGTATTGTTAGCTCTAGAGCAGTAAATAAAACTGTATTAGGACCAATTGTTGGTCAagATGTTTTTTGCCCAAAATCAAAAGCAGAACttaaagttgtatttaaaGCCGAAGAAAGCACGCAAAAGAAAGCTCCTGATGGGATGATCTTAGAGGGGGAcatcaaagtaaataaatttttcgaGGATGTCCGTGCGAGACAAGATAGTGTAACAAGAGATTTTTTGCAAGTCAGTGGCTACGCATGGGAAACATCTAAAATTCCTTATGAGTTTGAAGAAAATACATctaGCAAACTGAAGGAAGTAGTAAAGGCTGCTATTAACGACTTTGAAAACTTTACGTGCGTCCGTTTCATTCCAAGAACTAATGAAAAAGACTACATATCTTTCAAATCTTTGATCGGATGTTACTCATATGTCGGTAAAGTTGGGGGAAAGCAAGAAATTAGTTTAGCTGATGATTGTCTGTGGAAAGgaaCTGCTATCCACGAGCTAATGCATGCCCTCGGCTTCTTTCACGAACATACGAGATTAGATAGAGACGattatattaacataaactttgaaaatatttatccaGAAATGgccatgaattttttaaagtaccaAGAAGGTGTTGCTGGATACCTCGATGAACCTTATGATTATCAAAGTATAATGCATTATCCTTCCATGGCTTTTTCAAAGAACGGTGGACTAACTATTGaaccaaaaaacaaagaagtgaATCCAGAAGATCTTGGACAACGTCACGGATTTAGTCAAATTGATTTGATACAGCTAAACAAAGCTTTTagaTGTCAGGAGTCTAAAACTAGTCAACAGCCAACTAGCAGCCCTGGAGGGGACACTACTTTAACTACCAAACGTTCgctactaaatatttttgcaactACCAATCCAATAGTTATACagaaacacacaaaaaaagttcaattgaCAACTACAACATCCCCAAGTAAACATGTGTCAGTAACACAACCTTATAAATCTCAAAATACGCTGCATCAAAGTTTGAATCCGGCTAACAAGAGCTGTAACCAAGCTTTTCCTTGTTGGCCGATGGATTTTAAATGGACTCCAACCAATCAGCAATCGTGTTGCAATAACAAGCTAACTCAACCAAGTCAAAAAGAATGCCGATGCCaatgcattaaaataaacGATAATGCTATTAATCAAGCTTGCacaaaaaatagatttcaCAACTTTCTTTGCCACAAAAGAACTGCTCAAGacccaaattttttattgtccgatcaaaaactaCGCTCAGGTATGGAGTGTTTGCCTCTTGAAATGAACGAACAACTACaagcaatagaaaaaaagaaatatttatgttatagaaaagcttcaaaatataaactcTACTGGTCTCGAATCAACCCTGAAAAAATAGGAGAGAGCAGATGTTTAACTACAAACCAATCAACTTGTGAGGATCAAAATTCAAGATTTAATCAAATGGAGCATTATTTATGTGGAAATtga

Transcript

BRAKERKRET00000001893

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7ZXF5	Fatty acyl-CoA reductase 1 OS=Xenopus laevis OX=8355 GN=far1 PE=2 SV=1
Q7TNT2	Fatty acyl-CoA reductase 2 OS=Mus musculus OX=10090 GN=Far2 PE=1 SV=1
Q5R834	Fatty acyl-CoA reductase 1 OS=Pongo abelii OX=9601 GN=FAR1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004233 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03015 all species →	Sterile	Male sterility protein	Family	Interproscan
PF01400 all species →	Astacin	Astacin (Peptidase family M12A)	Domain	Interproscan
PF07993 all species →	NAD_binding_4	Male sterility protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006026 all species →	Domain	Peptidase, metallopeptidase	Interproscan
IPR034035 all species →	Domain	Astacin-like metallopeptidase domain	Interproscan
IPR033640 all species →	Domain	Fatty acyl-CoA reductase, C-terminal	Interproscan
IPR026055 all species →	Family	Fatty acyl-CoA reductase	Interproscan
IPR024079 all species →	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR001506 all species →	Domain	Peptidase M12A	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR013120 all species →	Domain	Fatty acyl-coenzyme A reductase, NAD-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11011 all species →	MALE STERILITY PROTEIN 2-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0005777 all species →	Cellular Component	peroxisome	Interproscan
GO:0035336 all species →	Biological Process	long-chain fatty-acyl-CoA metabolic process	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:0080019 all species →	Molecular Function	alcohol-forming very long-chain fatty acyl-CoA reductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13356	FAR; alcohol-forming fatty acyl-CoA reductase	EC:1.2.1.84	Longevity regulating pathway - worm	ko04212	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000001893.1 across 29 RNA-seq samples of Hydra viridissima. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

0TPM > 0

7Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole body	18	0	0.00	0.00
Whole	6	0	0.00	0.00
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	0	0.00	0.00
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	0	0.00	0.00
symbioic hydra M9 strain · symbioic hydra rep1	1	0	0.00	0.00
symbioic hydra M9 strain · symbioic hydra rep2	1	0	0.00	0.00
unannotated	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.