Gene detail

Detailed information of BRAKERKREP00000001910.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: XP_012554488.2, AP-3 complex subunit mu-1 [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y2T2	AP-3 complex subunit mu-1 OS=Homo sapiens OX=9606 GN=AP3M1 PE=1 SV=1
Q5R478	AP-3 complex subunit mu-1 OS=Pongo abelii OX=9601 GN=AP3M1 PE=2 SV=1
Q9JKC8	AP-3 complex subunit mu-1 OS=Mus musculus OX=10090 GN=Ap3m1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004395 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00928 all species →	Adap_comp_sub	Adaptor complexes medium subunit family	Family	Interproscan
PF01217 all species →	Clat_adaptor_s	Clathrin adaptor complex small chain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001392 all species →	Family	Clathrin adaptor, mu subunit	Interproscan
IPR011012 all species →	Homologous_superfamily	Longin-like domain superfamily	Interproscan
IPR036168 all species →	Homologous_superfamily	AP-2 complex subunit mu, C-terminal superfamily	Interproscan
IPR018240 all species →	Conserved_site	Clathrin adaptor, mu subunit, conserved site	Interproscan
IPR028565 all species →	Domain	Mu homology domain	Interproscan
IPR050431 all species →	Family	Adaptor complexes medium subunit	Interproscan
IPR022775 all species →	Domain	AP complex, mu/sigma subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10529 all species →	AP COMPLEX SUBUNIT MU	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0030131 all species →	Cellular Component	clathrin adaptor complex	Interproscan
GO:0006897 all species →	Biological Process	endocytosis	Interproscan
GO:0031410 all species →	Cellular Component	cytoplasmic vesicle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12398	AP3M; AP-3 complex subunit mu	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000001910.1 across 29 RNA-seq samples of Hydra viridissima. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

11TPM > 0

7Conditions

15.8Max TPM

1.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole body	18	3	1.03	15.82
Whole	6	5	1.71	2.33
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	1	1.01	1.01
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	1	0.94	0.94
symbioic hydra M9 strain · symbioic hydra rep1	1	1	0.37	0.37
symbioic hydra M9 strain · symbioic hydra rep2	1	0	0.00	0.00
unannotated	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977	15.82
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977	1.87
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977	0.92
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397	2.33
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397	2.29
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397	2.19
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397	2.07
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397	1.36
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397	0.00
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902	1.01
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902	0.94
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902	0.37
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902	0.00
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636	0.00

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.