Gene detail

Detailed information of BRAKERKREP00000001917.1 in Hydra viridissima

Genomic Location: QPEY01000005.1:893771...918271
NR annotation: XP_002160739.3, pleckstrin homology domain-containing family G member 5 [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERKRET00000001917

ATGGATCAAAAACAGTTtcgtgttttaattttatactgCTTCTTGATGGGAAAAAATACCGTTCAAGCGAAGCAATGGCTTGAAAAGTGTTATCGTGACTCCGCTCcatcaaaaacaacaataaaacgTTGGTTTGCTGACTTCAAACGTGGTCGTAGAGACACCGATGATGCAGAACGCAGTGGACGTCCAAATGAGTTGTGGGTGCCGCGTTTGCTCCCTGTTGACCAAAAACAAGAATGTGTTGATGATTCTGAGCAGTGTTTGGCCATGTTCAAACGTAATAAACCGGAATTTTTGCTTCGATATGTGACAATGGATGATATATGGATCCATCACTTCACTCCGGAATCAAAACGATTTTCATCTGAGTGGACAGCAACTGGTGAACCTCGTCCAGAGCGCCCGAAAGCACAAAAATCGGCTGGAAAGgaTTCATCTCAAAAGTATTTCAcattacattttattgatGATAGTAACAGTGAGAAAACAGTAAAGGTACCAGCCAGAAAAGGGAAAACTTTGAaAGATGCATTGAACTCAATATTAACCAGCCACAAGTTATCATTTGATACACACAGTGTTTTCTTAGACACTTCCAAAACTCCTCTCCCACAAGGAATTGACACATTTCCATTTGGAGGGCATAACTTGCTTGTAAAAGCTAATGAAAGTATTGAAGTTGATGAGagaataaagaatttaatgagagaagaaagtaaaaaatctcagGACACTAACAAGCGCTATTCTGATTTACTTGATCATTTTGCTACATATGGCTTTGATGGATTTGAGGAAGATGATGATATTGATGAAACAGattgtaaaaatgatttttttcttgaaaatgctTGGAATGATGTTGTTGATGTTTCTGACACTGAGGAAAGTAAAAGACTGCGGGTACAGCAGCAGTCTATCTGGGAAATTTTTACTACAGAAGTTAGTTATATTAAAGACTTGGAAATCATAATCAAGATCTTCAAAAGATGCTTGGATCAACTCAGAAAAGAAGGATACCTATTAGAGGTTGATCCTTACACAATCTTTGCTAATATTGATGAAATCCACCAAGTTAATGTTAATTTCTGGAATCGTTTTAAACCAGCACTAGAGAATGTTCGTGCTACAAAGATGCCCttcaaaactaatttattattgAAGGCATTTGAGGGGtttgaaGATTTGTTCCAACCttatattgagttttttaatgaagatacTTGCaacaagaaatatttcatatactCAGAGCAAACAAATTCTTTGCTCAAACAATACATTTCTtgGTGTGACAGTCATGAAAAGTGTATGAGATTAAAGTTGTCTGGATTTCTCATAAAACCATTACAGCGAATTACTAAATACTCTCTGTTACTTAGAGCAGTTCTCAGCAAAACAGATGATCCCAACGATAAAGCCATGCTTGAAGAAAcaatGTCAAGAGTGGAAACATTTGTTTCCAAAATCAATGCTGCTGTTCATTTAAGACAGGAGCAAGAAAAACTTTGTAGTGTGTTAACAAAGTTCGATACTTACAATCCTTTGGAAGCAGTATCATGTAGTGATGAAGTTGAACGAaTAGCAGCAGAGTTTTgtaactttgatttaaaaacagctATTCCTGGACTTTCCCTTCAGAGTCAAAGATTTATCATAAAAGATGGTCCTATGAAAATTCTTGATAAGCAAGGCAAAAAAGAAGTTCAAGTGTTTCTTTTCACTGATTTATTGGTGGTAAcaagattaaagaaaaagattgatCGATATAGAATTATTCGTCCACCATATCGACTTAATAAACTTGTTCTCCGTGATCTCAAGGATTCTTGCTCAATACTGTTTGTTTACCTTAATGAATATGGTGTTTTATCAACTGCatttgttttacaaacttCATTAGGCGAACAAGAAAAGTGGAAAACAGCTGTTTTGGATGccaaaACGAAATACGAAAATTCCAGAGTAGAGTATTCTAATCATATAGAACTTATTGATGAGGAACTTCCAGATTCTccgattttacaaaaactgttgAATAATCGAAAGAACATCAATAAGAAGCTAAGTATTTCATCAGATATTTCGGATAAAAACACTGATAAAGATGACTTGCAATGGAGCAATGCAAAAATTTTCGCAATTGTCACCTTTATATGCATAATAAACGTTctgctttcaaaaattttataa

Transcript

BRAKERKRET00000001917

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O94827	Pleckstrin homology domain-containing family G member 5 OS=Homo sapiens OX=9606 GN=PLEKHG5 PE=1 SV=4
Q66T02	Pleckstrin homology domain-containing family G member 5 OS=Mus musculus OX=10090 GN=Plekhg5 PE=1 SV=1
Q6RFZ7	Pleckstrin homology domain-containing family G member 5 OS=Rattus norvegicus OX=10116 GN=Plekhg5 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001487 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00621 all species →	RhoGEF	RhoGEF domain	Domain	Interproscan
PF17906 all species →	HTH_48	HTH domain in Mos1 transposase	Domain	Interproscan
PF02196 all species →	RBD	Raf-like Ras-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR000219 all species →	Domain	Dbl homology (DH) domain	Interproscan
IPR035899 all species →	Homologous_superfamily	Dbl homology (DH) domain superfamily	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR041426 all species →	Domain	Mos1 transposase, HTH domain	Interproscan
IPR003116 all species →	Domain	Raf-like Ras-binding	Interproscan
IPR040181 all species →	Family	Pleckstrin homology domain-containing family G member 5/7	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13217 all species →	PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY G MEMBER 7	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007266 all species →	Biological Process	Rho protein signal transduction	Interproscan
GO:0030139 all species →	Cellular Component	endocytic vesicle	Interproscan
GO:0030424 all species →	Cellular Component	axon	Interproscan
GO:0043542 all species →	Biological Process	endothelial cell migration	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKREP00000001917.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000001917.1 across 29 RNA-seq samples of Hydra viridissima. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

0TPM > 0

7Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole body	18	0	0.00	0.00
Whole	6	0	0.00	0.00
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	0	0.00	0.00
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	0	0.00	0.00
symbioic hydra M9 strain · symbioic hydra rep1	1	0	0.00	0.00
symbioic hydra M9 strain · symbioic hydra rep2	1	0	0.00	0.00
unannotated	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.