Gene detail

Detailed information of BRAKERKREP00000001931.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: XP_012553709.1, uncharacterized protein LOC100208426 [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

BRAKERKRET00000001931

ATGACCAAAAGTAATTCTTCCAActcatattctttttataatacaaacaTTGAGTTACCTCGTGTTAGAAGACTTTCTCCACGATCTAGTCCTTTTCCTTTAACCTCGAACAAATCAAATCAGAGTTTACCCACTGAAATAGTAAAAGAATCATCGAGCTGTAATTCGAAAAGCCcttcatgtttttttgaagaaagtgCATCGATTGGAATGGATAATCTATCTCAAGATAGAGTTAACTTTATTCCTCACCCACCTACTGAAATTAGGAGAAAAAAGTCTGTAGAAACTTCAACATCAGATAAAAGTGAATTAGATTTATCTATTGTTGCTACCAATAATGATACATATCTTAAACCTTTTGTTGACACAGTTGGTTATGAACAAGGTGATGAAGGAAAAAAGCTAATAGGAATGTATAAAGACTTTTTAAGTCACAGATATGGCAAAGAGATATGTGATTCATCCAATGTATGCAATGATGAAAGCGATAAAATTTCCACATCTTCTGATGATGAATTTAGTATAAGTAGTTTGTGCTCCTCAGATAAAGATGAAGAAGATAGTTTCTTAACAAATGCAATTGCACCAAATGAGTTTGAACCATTATATAGTCTtcctaataaatttaaaaatccagaaaattttaaaaaatttcaacataacAAACATCTCAACAGTATTGTATTGACTAAGGCAAAATTAGGAGTTGATGAGAAATGCTATACAAATTCTCTTCCTGATCTGAGAACAatagataaatttgttttaaaaaagactagTCATGTTAGTAAAAATGAATCTGAAGCTGAAAGTGAACCAGGAGCAGAACGAGTGTACAAATTTCGTCCATTACCACCAATACCATCTTCAAATTTGCAAAATGATTCTGGATTGTATGAAACACTTGACcatcaaaaagaaagaaatgaagTTAATCATGACGGTaatcataaaacatttaagcAAATTGCACAAATGATAACTTTGATTCCAAAATTAACTACTCGTTCAGTTAGAAGTCGAAAAAGTGACCACCACTTATCAGAGTTGACAAACTATTTACCTAACAAAAAGCTTACTATTTTTGTCGGTACTTGGAATATGAAAGGAACTAAGtttttaccaGATTCATTGGACAGCTTTTTATTGCCAGCAGAGAGTGAATTTTTACAAGATATTTATGTGATTGGAACACAGGAGGGAACTCCATTCAGGAGAGAGTGGCAAGTTCGACTTCAAGAAACGTTCGGCCCATCACATGTTCTTATGCAAGCCAGCAACTTTGGAGTGTTACAAATGTCTGTCTTCGTGCGTAGAGAGCTTGTATGGTTTTGCTCAGGAATCGAACAAGATACAATTGCTACAAGAGTAGCACATAAGATTAAAACAaagGGTGCGTTAGCCATGAGTTTTAATATCTTTGGAacatctttactttttataacttcCCATTTTGCATCTGACACAGAGAAGGTTCGTGAGCGTATTAATGATTATAACAGAATTTGTGCAAGTATTCAATTACCGTACCAAAACACAGAAAATATTGACACAAAAGACTTTACTAATCGTTTTGATAGAGTGTTTTGGTTTGGCGACTTTAATTTTCGTATAACACAAACACGAAAAGttgttgatgaattttttgctCTATATGCTAATGACCAGTCTTTTATGATTAATGAACTTCTGAAGTATGATCAACTAAGAAGCCTCCGTAACAAAGGTCAAATATTTCATGGGTTTTTAGAAGCACCAATACATTTCATGCCTACATATAAATTTGATGACAACACAGATAACTATGATACATCTTCCAAGAAAAGGGTCCCTTCATGGACTgATCGAATTGTTCATAAATCAAAACCACCCAGTGAGCTGGTATCAATAGTTTACAATTCATGTAGCTCAATCAAAGTGTCAGATCACAAACCAGTTTATGGTATATTTGAAACAGTGATTGAGCCATTTAAAGAtaattttcGAGTTTCTGGCGCGCAATTTGACAGAGAGATCTATGTTGAAGCTAATTTGCGTCGGAGTGCTCCGTCTGGAAATCATGAAAACAGTCACGTTTGCATCATATTATAA

Transcript

BRAKERKRET00000001931

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9WVR1	Phosphatidylinositol polyphosphate 5-phosphatase type IV OS=Rattus norvegicus OX=10116 GN=Inpp5e PE=1 SV=3
Q9JII1	Phosphatidylinositol polyphosphate 5-phosphatase type IV OS=Mus musculus OX=10090 GN=Inpp5e PE=1 SV=1
A0FI79	Phosphatidylinositol polyphosphate 5-phosphatase type IV OS=Pan troglodytes OX=9598 GN=INPP5E PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004581 (this species only)

Pfam domain

No Pfam domain signature was detected for BRAKERKREP00000001931.1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR000300 all species →	Domain	Inositol polyphosphate-related phosphatase	Interproscan
IPR053321 all species →	Family	Inositol Polyphosphate 5-Phosphatase Type IV	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47039 all species →	INOSITOL POLYPHOSPHATE 5-PHOSPHATASE E	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016791 all species →	Molecular Function	phosphatase activity	Interproscan
GO:0046856 all species →	Biological Process	phosphatidylinositol dephosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20278	INPP5E; inositol polyphosphate 5-phosphatase INPP5E	EC:3.1.3.36	Phosphatidylinositol signaling system	ko04070	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000001931.1 across 29 RNA-seq samples of Hydra viridissima. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

18TPM > 0

7Conditions

24.7Max TPM

5.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole body	18	8	5.54	24.70
Whole	6	6	5.32	19.22
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	1	2.04	2.04
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	1	2.03	2.03
symbioic hydra M9 strain · symbioic hydra rep1	1	1	1.09	1.09
symbioic hydra M9 strain · symbioic hydra rep2	1	0	0.00	0.00
unannotated	1	1	12.97	12.97

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977	24.70
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977	18.23
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977	16.66
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977	12.08
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977	10.97
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977	8.08
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977	4.82
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977	4.16
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397	19.22
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397	3.18
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397	3.16
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397	2.89
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397	2.47
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397	1.00
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902	2.04
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902	2.03
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902	1.09
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902	0.00
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636	12.97

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.