Gene detail

Detailed information of BRAKERKREP00000002648.1 in Hydra viridissima

Genomic Location: :...
NR annotation: XP_020607236.1, malignant fibrous histiocytoma-amplified sequence 1 homolog [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERKRET00000002648

ATGGCCATTTACAATGAGTGGCCGAACTTTTCAACGTTAGCAgaatcaaaaattgtaaagattAATACAAATGAAATGTATGATTTACCTGACGAATTCAACAAACTGAGAAATGTTGTTGAATTGCGACTAGTTCGCAATATTTTCAAACCAGGAAGAGGCTTTTCTGAATTACCACCAACAATATCCCAAGTCATCACTTTAAAGCTTTTGGATATGCATGCAAATCCGTTGGAAAGCATACCCCGGACAATATGTAGTTTGCCTAATCTATCTGAACTAAACCTTGAAAGCTGCAAAATAAATACCATTCCTGATGAGTTTATGAATTTatgcactttaaaaaatcttattttagaTTACAATAACATTACGATTCTTTTGAATATTCCTCATAATGTTAGTTATCTTTCACTAGTGGGAAATGCTGTTTCTGATCTTTCTGCTTTGTGTAATCTCAAAAAATTGACTCTCTTAGATGTCAGTGAAAATAACATATGTAGTTTACCTGAAGATCTCTTTGAAAATAAGCAAGATCTGCAAAAGTTAATTGTTCGAGAAAATTATGTTGAATTTTTGCCAAAATCAATTGGGAAGTTGCAGTCATTATGTGTAAtgaattttagtaaaaacaaacttaaagaCTTGCCTGAAGAAATTGCAAATCTAAGATGCCTCAAATATCTCAACCTTTCTTATAATCAGTTAACATCTCTATCAAAATCATTAATAGCATTAGATAACCTAATAaacggaaattttttttgtggcaGTAATCCACTCCAAAAACCTCCAATTGAGGTTGCAAGAGAAGGATTAAGCATGATAAGGGTTTATTTTGCAGCATTAGAAAGAGAACCTGAAATTCATAACAAACGAACTAAAATCGTAATTCTAGGAGAAAGTGAATCTGGTAAAACTTCATTTGTCCATGCTGTTGTCAATGGAAGAGAGCAAAGAGATTGTGAAAAGGCTTCAACAATTAGTATTGATTTTTTCCATTGGAAAGCACAGCCACTATCAAAAAATGGTTTGGAAATACTTTTTGTAGATTGTGCTGGccagaaaaaatatatggtTACACATCAGCTTTTTGTCTCCCAAGgtaCTCTGTTTGCGATTATTGTTGacttagaaaaatataaaccagatccttcatgttttaaaaaacagattgGGTATTGGTTGGACCTTGTGATAGCTCGTGTTCcgaattcaaaaatattgattatacCAACACACATTGATTTGATTAAGGATCCTGATCTTATAACTGGTAGATGCAGAGATATAATAGAAAGAGTTCATAACtatattgatgagaaaaaTCAAGAtcaaaaagatgattttaaatctcttGCAAGACCGTATCTGCCAACATCTTATTTAGTAAATACTGAAATTCATCATATTGTTCCAAAGAAGCACACCATTACTTTAGTTCCTATCAGCAATAAAGGAGCATTTCCTGGTCTCACTAAATTGAAAGAGGAAATTATACGAGTAGCTACTCATGAACACTTATGCCCTAATACCAATCATGTTGTTCCAGAAAGTTGGATTAAACTTGAGGAGCTATGCATTAAAGAAAGAGGCCTTTTGAAACCTCCTGTCATTTCTGTTGATGAActaatgaataaaattgatcagcttatgaataaaaaaggaTATTTTCAATCTAAGGAAGATGCTATTCAAGCTTTAAGGTATATAGATTCTGTCGGACCTGTGCTTTACTTTTATGGCGTTGAAAACTGTGAAGTTGTCTTCCTTCAACCTATATGGCTGTTAAAACTGTTGAAGTTGGTATTTCGTGATGATCACCAATCAAATTTATTCTATTGCgaaagattttatgaaaaatattttgagaaagattttgatcaagaaaaaaactacctgctggaaaaagcaaaattatcaaaaaaacttttgagGTGCCTTTGGAACGatgaaattaaagataaattacttttcaagCAAGTCATagtaatacttaaaaaattcgattttgtttatgatatgaaaaaaaagaaggacaaaaaacattttttgcttgtacccttcttttttaaagatcagCAACCTACacaagtaagaaaaaaaatgcctgATGAGattttagaaaattttgtaaaggaATGGAGAGGAATTTCATATCGTTTGAGATCTTTATGCCCAAATCAGCATAAACCCTCTGCAACCTGGCCATTAGATATTTCAAAGTTGCGtttaaatttagaagaaaCCGTTTGTTGTAATGTAGATGGAAATCTCATTGAGACATGGCTTATCTTCCCACCAAGAGGGTTGTTATTGGTGTTTATTCCATCTGAACAGCTTGATGAATGTTGTACCAAAAATATGAATGaaTTCTTATCCAAAGACGAGATGAATTTACTCGCCGAGTGTCTTTCCGATCGCCCGGAGGAGCTGCGTCGTGCACTTAATGTTAGTTTATCTGAACTCGACGTTTATGCAGAAACCATTTCTAACTCTTCTGAACGATCGAGGCGAATTATTGAAATTTGGCAACGAAGAAAAGATCCCAcaagaaaacattttgtcGACGCGATGCATAACATGCGACCGTATCCCGGTAAAGCTGTTGACATAGTTATATCTAGAAACTGTGTAGTATGTTATTAG

Transcript

BRAKERKRET00000002648

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08477	Roc	Ras of Complex, Roc, domain of DAPkinase	Domain	Interproscan
PF00560	LRR_1	Leucine Rich Repeat	Repeat	Interproscan
PF13855	LRR_8	Leucine rich repeat	Repeat	Interproscan
PF16095	COR	C-terminal of Roc, COR, domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR020859	Domain	Roc domain	Interproscan
IPR032171	Domain	C-terminal of Roc (COR) domain	Interproscan
IPR003591	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46662	DI-GLUCOSE BINDING PROTEIN WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan