Gene detail

Detailed information of BRAKERKREP00000005125.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: XP_047127274.1, uncharacterized protein LOC100215572 isoform X1 [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

BRAKERKRET00000005125

atgaatattttgaaagacAAGCTTGAAGCTTATGCCGTATCAACTGTGGAGGATACCCAAAAAGTTTCTCTTTTAGACAATTTTGCTATTTCAGTTGAAAAGGCTAAAGAAGAGGCTGATTTAAATTCTCAATTAAAACAAGGAAATATCTTAAAAGATGGAAAGGTTTCTGAAGACTTTTGCAATTGCTTATTTGCTATTCTTAACCATGAGTTGAAGGGGAAAAAtaattcaaTTTGGCGCATTGCTGAGATATTGTCTCCAAAAGAAACTGTTCATATGATTTACAGGATGAATTTCAAGCAGAGCGATAAAACAAGAAGTGAAGCTTGGATTCGTCATTCCTTAAACGAAGGCAGTATGGGAAGTTACTTCAATTTACTTATTGAGGgctcaaatgttttaaaGGATTTCTACAAACCATCGGCCTTTGTTCGGGACAAAACTAAGATGCAATCTGTACAAAACTTGATAACTTATGCTATATCTGCAATTCAGTTCAGCATAAGTGTAGAACAAGTTACAAGCAATCATGAATCTTTGAATCTTGCTTCTTCATTTGAAGTTGTAAGAAGCTTTACACATGGAGAACAAACGAATGCTCGTAGAAAACCTCGTGGACAGGCATCAAATATTGTTACAATTTCTGATCCAgaagtattttcaaataatggaAATGAGTTTGAATCTTCAACAGTTAAAAATCAACACTCTGAAAATCAAATTACTCTTGATGATTCAGTTATCcacttaaatgaaaaattgacaAACATGACTGTTGAAACAAGCTTGGGctgtaataaatgtaaaacacCTGAGGTTGATTTAATAGAtcatgaaaaaactaaaaacactTGTACAACTATTGCCAATCCATCCAGTGAACCCCAgaataataaactaataaagaTAGATCAGTTGATTGCAACACCAacaaattgtattaaaaatttgagcaCAGAAAATAACTTGGATAGAGCTTGTGATGTATCAAGTAGTACAATAGATGAGAATAGTCCTATTAATCTGGGCTCTGAACTTTTCCCTAACTTAAATGAAGgaaattataacaataacttttgtaatgataataattataatgataCAAAAACTGGTGAAATGCTTTTGCTTAGTTCAGTAATATCTAGTTCTTCTATTTCAAACGAACATCCaatcaaagttaaaacaacAGAGTTAGTTCCAATACACAATACCCTGTCAATTATGCCTACATCCACACTTATACCATCAAAAACCTCTGCTTTCTGTCAAGTAACTAAACTCAATAAATTAAGTGTTGCTGATAATGctgataacaatttttttagtttagctAATGAACAAGttgaagaactttttaattacaactCAGAGAGTTTTGCAGAAAATAGTTTGTTAAACAATGGAATAGAAAATGAAGAGAATGATGAAATAGGATCAAAAATGGTTCTTGATCATtttggatacaaaaaaaatgttgatggtGAGGTTGGTGATAAGTCTAATTCTGTAAATGGAATTAATGATTCAGAGCATGTATCAAATGTTCTTGAAATCAATAAGCCGTTACCTGAGATGCATTATGTTCCAGGAATTCTTACAAACGAAAATGTTGTTGAAAGTTCAAGTCAAGTTAAAGCTGAAAAACCATCTTATTTGTCAACTGTTTTATCAAATGAGCCTAAATATAGTTCACAAAGTTTGATATCAAAGAATGCTAAAATATCAACAGTATCCAAATCTTTTGAACAACAACATTATATTACTGATTCTGATAGTGACACATGCAGTTCAAGTGATCGAAGTTTCAGCATACTAGCTGAGCTTGGTATTAGTGATAGCTTTATTGGTTTAAAAGAAGACTACTTTTCTTCTCCAgagAGTTTTATGGGTTTCTCCTCACAAGAGGAGCTTCAAAATGCTATAGCTTCATGTAAAGAGCTGATAAAAAGTTCCCCTGAAAAATCAGAGCGAAGAAAAGAACTTGTGACCCAGTTGATACAATTGCGATTAAAGCAACAAGAGCATGAGgaGTTATCAGCCATTGGGGTTATACCCCACACAAAGAAGGTACTTGGTCACCAAATGCAAAAACAAGCTCGTCTATCCTTAAAAGTTGAATGTGATGTTTGTGCTACCATGATTTGGTTGCTGTTACAGAAAGCTTATATTTGTAAAGACTGCGGTTTTCACTGTCATCAAGCATGCTTGCGTAATTTGGACAAGCCATGTATCAACAgtaaaaagACTTCTGAAACTACATACCAGATGGAAATATGTCCTGAGAGTGGCCTTTCATCTCAGCAATATCGATGTGCTGATTGCTTTCAcagaataattttaaaAGATGGTGTTTTTGCATCTCGTATCTGTGATTATACTGGCCTTCATTACTGCCATAGATGCCATTGGAATGATACTTTGCCCATACCAGCTCGAATCTTGCATAATTGGGATTTTACACCTAAACAgGTCTGTCGCCAGTCAAAATTCATATTGCTAAGCATGTTGAGAAAACCTATTATAAACTTACAAAATGTAAATCCATCTCTATTCAGCTTTATTGAAGAACTCCAAGATGTTAATACCCTGCGTGTTCAAGTTATCTTAATGAAAGAATATATTACTACTTGCCGTATTGGTATTCAGGAATGTCTGCTTCTTAATtttcaaAATCGTCAACACTTTATGGACAACTCAAACACTTATTCGTTACAAGATTTAATAGATGTTGAAAGGAATATTTTACTTGAAGAGCTTACTATAAAACATGCAATCCTTGCTAAGcatattaaatttgattgtcctcttTGTCAAGGTAAAGGCTTCGTTTGTGAATATTGCAACGctaatgaaattatatttcCTTTCGATAATCATGTCACAGTGTGCTCGTGTAAAGGAACTTTTCATCGATTATGCTATTCGAAGAATACTTGCCCAAAGTGTGCTCGTGTCGTTAAGAAAAAGAGAGGGTCAGATAAGATAAGCGATGCCGTGACGTAG

Transcript

BRAKERKRET00000005125

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q99J78	Differentially expressed in FDCP 8 OS=Mus musculus OX=10090 GN=Def8 PE=1 SV=1
Q6ZN54	Differentially expressed in FDCP 8 homolog OS=Homo sapiens OX=9606 GN=DEF8 PE=1 SV=2
Q4V8I4	Differentially expressed in FDCP 8 homolog OS=Rattus norvegicus OX=10116 GN=Def8 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004661 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02759 all species →	RUN	RUN domain	Family	Interproscan
PF13901 all species →	RH_dom	Rubicon Homology Domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002219 all species →	Domain	Protein kinase C-like, phorbol ester/diacylglycerol-binding domain	Interproscan
IPR037213 all species →	Homologous_superfamily	RUN domain superfamily	Interproscan
IPR046349 all species →	Homologous_superfamily	C1-like domain superfamily	Interproscan
IPR004012 all species →	Domain	RUN domain	Interproscan
IPR025258 all species →	Domain	Rubicon Homology Domain	Interproscan
IPR047983 all species →	Domain	Differentially expressed in FDCP 8, C conserved region 1	Interproscan
IPR051366 all species →	Family	Differentially Expressed in FDCP 8 Homolog	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12326 all species →	PLECKSTRIN HOMOLOGY DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for BRAKERKREP00000005125.1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23282	PLEKHM1; pleckstrin homology domain-containing family M member 1	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.