Genomic Location: QPEY01000017.1:232044...257941
NR annotation: XP_047130817.1, GRIP and coiled-coil domain-containing protein 2-like isoform X3 [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families
| CDS |
| BRAKERKRET00000005259 |
| Transcript |
| BRAKERKRET00000005259 |
| Protein |
| BRAKERKREP00000005259.1 |
| UniProt accession | Description |
|---|---|
| D3ZZL9 | GRIP and coiled-coil domain-containing protein 2 OS=Rattus norvegicus OX=10116 GN=Gcc2 PE=1 SV=1 |
| Q8IWJ2 | GRIP and coiled-coil domain-containing protein 2 OS=Homo sapiens OX=9606 GN=GCC2 PE=1 SV=4 |
| Q8CHG3 | GRIP and coiled-coil domain-containing protein 2 OS=Mus musculus OX=10090 GN=Gcc2 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001845 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF17039 all species → | Glyco_tran_10_N | Fucosyltransferase, N-terminal | Domain | Interproscan |
| PF16704 all species → | Rab_bind | Rab binding domain | Domain | Interproscan |
| PF01465 all species → | GRIP | GRIP domain | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000237 all species → | Domain | GRIP domain | Interproscan |
| IPR031481 all species → | Domain | Fucosyltransferase, N-terminal | Interproscan |
| IPR051841 all species → | Family | Microtubule and Golgi organization protein | Interproscan |
| IPR032023 all species → | Domain | GCC2, Rab binding domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR18902 all species → | NUCLEAR MITOTIC APPARATUS PROTEIN 1-RELATED | Interproscan |
BRAKERKREP00000005259.1 in Hydra viridissima.BRAKERKREP00000005259.1.Transcript abundance of BRAKERKREP00000005259.1 across 29 RNA-seq samples of Hydra viridissima. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole body | 18 | 0 | 0.00 | 0.00 | |
| Whole | 6 | 0 | 0.00 | 0.00 | |
| aposymbioic hydra M9 strain · aposymbioic hydra rep1 | 1 | 0 | 0.00 | 0.00 | |
| aposymbioic hydra M9 strain · aposymbioic hydra rep2 | 1 | 0 | 0.00 | 0.00 | |
| symbioic hydra M9 strain · symbioic hydra rep1 | 1 | 0 | 0.00 | 0.00 | |
| symbioic hydra M9 strain · symbioic hydra rep2 | 1 | 0 | 0.00 | 0.00 | |
| unannotated | 1 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM,
StringTie quantification over 29 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
