Gene detail

Detailed information of BRAKERKREP00000005429.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: XP_047136121.1, transcription termination factor 2 [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

BRAKERKRET00000005429

ATGGCTGGTAATTTAACTGAAGCGttgattaaagaaaagttacCTATTTGCCCAAATCATGgaaTACATTGTGTTTTGAAGACtggtacaaaaaataataatacatatGGAAAGACTTTTTTCATCTGCAACAACTCAAGTGGCTGCACATTCAATGCACCAGCAAGtgatttcTCTGCAACAACCTGTCCTATTCATAAACAAATGGTAGAGTTAAAAGCTATTGCAATTAGGGAAGATGGAATGAgatgtTATTATCGATGTCTTTATGGGAAAGAGTCTGGAACAACCTGGTGTGGCCATGCTTTGCTTAAGagcAAGCTTCCTATTTATGATGCTTTAAGAGAGATTACCAATGTTCAAACAAATGGTTCTATAAACTTGTTCAAACAACATAAAGACATTGAATTTTCTGAAATTGGAGACTTATCATGCAATAAcataattgacaaaaaaaaagatattcataGAACTGATCAATTTAgtacaaattcaaaaaaagatgcCTTAACTGTTTTTGACCAAAAGCCAACAAAtgaatcaaaaaatctatttaatatACCTTCCACAGCAGAAAAACCACTAAGcattaatttagtttcttcTAACAACAATGTTGACTATTTTTCTAAGACTTTCCATATTCCTCGAACAGCTCGTGTAAGTGATGTTTCAGAGGCTAGTTCATTTGATTCTAGTTTGTCATCAAGTCATTTAAGTGATAATAGTTTTCAAGAGTctaacagaaaaaagtttgattgtgAATTAGTAAATGATAACACTGAAACAATGAAAACAATTGCAGGTGTCTTTACTGATGTtaccagtaaaaaaaatattcaaccaACTGCAATTGAGGGTAGTATAACTAATATAAGCAATAATGATAAACAGCTATTATcaaatgacattaaaaaatcttcaatggCAACACACTCAGTTGTAACAATTATTGATTCAAGTGAATCTGAAGAAGAAAGTGAAGTAGTTAGAGATATGATGGTTTCAAAGGTTTCTGTGGAAGAACTGcagtctaaaataaaaaaacaaacaATCTTATTACATCGGATTGGTCCAGGTTCAGTAGATGGTGGCAAGAAGATCCAAGAAAGTATAAACAAGTTGTCATTAGAACTTCAGGATATGCtgaaatttaacaaacaaaatCCATCAAATCAATTAGAAGTTAATCAGAAAATAGTTCTTTCATCTAAACTACCTGAGAATTCATCAAGACAGTCTTCTACTATTAGTTTAGGTTATGATCACCCACGATTATTTATGCAAGATCCGAGTCATCACCGTGCAGCACCTTTGTTTAATGGTCAAATGACACAAACCAAGTTAAAAGAAGTTGGAAGAATCACTAAAGAAGCAGTTGAACACTTGCATAAATCACTTGATTCATGCCCAGCTTCCAATCAAGAGGCAGATGAACCGAAAGGTTTGAATGTTTCTTTAATGACACATCAAAAGCAAGCACTTGCTTGGTTGATCTGGAGAGAAAGCCAAACACCGTCTGGAGGAATTTTAGCTGATGATATGGGCCTTGGAAAAACATTAACTATAATTTCATTGACCcttaaaagtaaacaacaaaatctCTCACTCATAAAGGagcCAAAGAGTGATTCACAGTTGGTCTTTTCAAGATCAACACTCATAATATGCCCTGCTTCTCTTGTCCACCAATGGCATAAAGAGGTAGAAAAACATGtagaaaaaagtaacttaagtGTTTATGTATATCATGGATCAACAAGGGAAAAGAGattaaaaaggttaGCATCATATGACATTGTACTTACAACATACAATATTGTTAGCAtagaaggaaaatattttgttgataaagaCAAAATAAAGCCCAAAAAGaatcaaTTGTCTGAATGGTTAGAAACTAGTCAACCAAAAACTGCTGAAGAAGGtccattatttaaaatcttttggaGGCGTGTGGTTCTTGATGAAGGCCAtactataaaaaatcataaaactgGGTTATCGATTGCTTCCTGCGCAATTGAATCAgAAAGTCGTTGGATAGTAACAGGTACTcctattcaaaataaaacattggATTTATATTcacttgttaaatttttacggGTATCACCATTTGATGAGTATAAAGTGTGGATGAGAGAAGTAGACAATAAAAGTGTTGCCGGAACACAAAGACTTAACTCAATTGTAAGCAGTTTATTGTTGCGCAGAACAAAAGACCAGACAGATAAAGACACAGGGAAAAAGCTggtAAATTTGCCAAAGAAAAGCTCTATTCTTCATAAAATCAAGTTATCCGAAAAAGAGTCATTAGTATATGATCTGCTACAAAAGTTTTCTAAAAATATGTTTACACAATATCTGCATAAAGGAAAAGAAGGTAGCCCAACAGCTTATGATCAAACCAAAGGTTCTATAGAAATGCCAACTGAAGTTCTTGGTTTAAATGTTGAGGAGGCTCTCACCATGTTTggtttaagaaatatttctgCTGTAAATGCTGGTTGTATCTTGGTTCTTGTTTTAAGATTGCGACAGTGCTGCGGACATTTAAGTCTTTTGTGTGAGgcTGTAGACTCTGAGCTGTGTAAAAATGAGGGAATTGATCTACCATTAGATGAGCATTTTGGCAACCTTTCAATTCACCATGATAGTGCAGTctttaaaAGCTCTCGTCCAAAGGAATTAATGCCCAGTTTTCCAAGTACTAAgATAACTACTTTAATAGACTGTTTGAAAGATTTGCAAGATCAATCATTGGGCAATAAGCAGATAAAAAGtgtGATTGTATCGCAATGGACACGCATGTTAGAAATTGTAGCCGATCATCTTAAAAagcaaagatttaaaattgagtttaTAACAGGAAGtgTATCCGCTAAAAATCGATCGGATATTGTTGAAAGATTTAACAACGATGTGGAACCACAGgtGCTATTGGTTTCATTAAAAGCTGGGGGGGTCGGATTAAATTTAGTTGGAGGATCCCATTTGTTTCTGCTTGATCAGCACtggaACCCTGCTTTAGAAGATCAGGCGTGCGATCGCGTTTATCGAGTTGGGCAACAAAATGACGTTGTTATCCATAGatttctGTGTGAAAACACCGTAGAAGAGAGAATAGTAAAGCTACAAgaccagaaaaaatctttggCTAACGACGTTCTTTACGGCGGAAAATCGCAGAAACTCACTTTGGATGACTTGAAGATGTTGTTCGGCATATCTCAACTGAGATga

Transcript

BRAKERKRET00000005429

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5NC05	Transcription termination factor 2 OS=Mus musculus OX=10090 GN=Ttf2 PE=1 SV=2
Q9UNY4	Transcription termination factor 2 OS=Homo sapiens OX=9606 GN=TTF2 PE=1 SV=2
P34739	Transcription termination factor 2 OS=Drosophila melanogaster OX=7227 GN=lds PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001701 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00176 all species →	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000330 all species →	Domain	SNF2, N-terminal	Interproscan
IPR050628 all species →	Family	SNF2/RAD54 Helicase and Transcription Factor	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR038718 all species →	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan
IPR049730 all species →	Domain	SNF2/RAD5-like, C-terminal helicase domain	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45626 all species →	TRANSCRIPTION TERMINATION FACTOR 2-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0140658 all species →	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0008094 all species →	Molecular Function	ATP-dependent activity, acting on DNA	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15173	TTF2; transcription termination factor 2	EC:5.6.2.-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.