Gene detail

Detailed information of BRAKERKREP00000005543.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: XP_047136064.1, telomere-associated protein RIF1 isoform X1 [Hydra vulgaris]
Species abbreviation HVIRI · all data for this species · gene families

Sequence

CDS

BRAKERKRET00000005543

ATGGCAGATGTAACTCCTGCATCCATAGAAAgtatactaaaaaaactttgcaataGTAATGCTGAGGTCAATCAGAAAGTTGATGGTTATTCTACTCTTTTTAGtaattttcaACAAGAGAAAGATTCTGTAactgttttaatgaaaacatatataaacaaaCTCCTAGCTGTTCTGCagGTAGATGTCAAGCATTCAAATATTACACTAGCAGAGTCTGCATTGTCTGTGATGGGTCAATGTCTTGCATCAGAAGAAATTCTAaggcATTCAGATGTGTTACTTGTAGCAAAGACTATTCAAGtactTTGTTCCAATCTCGAATcacaagaaaataaatcagtTTGCATCAGAACACTTTGGTGTTTCACTAATCAGCGCATTTCTCCTGACAATATTAAAGAATATGTTCCTATAGTTGTTGATCAATTCATGAAACTGtcttcaaacaaaaaacagaagTCTGAACTGATCATTTGTGAGGGTTTACGGACAATGAGAAGGTTTTGTGAACAATGCCCAGCTAAAATGGAAGAACTAGCAAAAATATGGTTCATTGATCTTTTTGGTTATGTGTTAAGTGAAGTCCCTAAGATACGCAACTGTACTCTTGAACTTATTCAAGCTTCAATGAGTTTGCTACTGAATCAGCAAGAATTTTTGAGTTGTTATTTACTTGAGCAGTTAAATCATGGGAACTTATCAGAAACTTTAAAGACATCTTTTGAACAAGGCTCTTGTCCTGttcatgttttaaatacttggaCTTGTGTGTTGCGTTTATTGGGAAAGctTTTCTTCGAACTGAACAGAGTTAGTGTATTAAATCCTTTACTGAAGATTGCAGAAAAGtcaTTTGCATCAACTAATTGTGAGGTTTCTCTTGCATTAACTAATATGTGGAGGACTTTAATAGATGTTGTGTTTCTTGTTCCAGgtgGATTTAGCAAACGAatggagaaaatatttttacttccaATACAGatGAAATATCGGAATGAAGTTGtagcaaatgaaaatttaaaaactcactGGCATTTAATATGCAGCATCAATGAAAATGTTAATTCTTTTGTTGAAAAGTTGATCCTGCCATTGCTGTCCGTATATCTAAGTACAGAATCTACTGATAAACCAGAATCTCCAAATGCTGGTTCAGAACAAATTGTTAGACGTCGTTCACGAAATCATACTCCATATGTTTTTTCTACTTCAACAAAGATACTAGCAGCTGAGATTCTTATCCAGTTGCTGACAAAACAAGAGGATCGGATTAAAacgaaatcattaaaattggAGCTTTTTAAAGGACCAGTATTAAATGAGGCAAACTTAGTGAACCATTttccaaagattttttcatttgttatgaATGCTACTGAGAGTTATTCAATTTCAAATgaAAATGATGTAACTCAACTGTGGACAGCTCTGTTTTCAGCTTTTAGAGACATCAATCATGAAGGAGATCATTTCAAGTCGCTTTGGAAAGAGCTTCTTCTCggcattaaaaaagtatggGAACAGAGTACAAGTAGTGTCATATTTATCATGAAAGTGTTATTGATTGTTCCTGAAGCTACGCTACACTTGCGCCACCCAGACTTCCAATGTCAAACCAATGATGCAGGCCTAACATCTTTGTTTATAATTGGAATgttattgcataaaaaaatgtttgaaaatggTGGTTTGGAACAGGAAAGgtatttcattttgtttgagCGAATGATCACTGTTTTGTTTCAAGGAATAAGCAATCAATTACAGTCTGTTCAATTTGTTTTCACAATGCTTGTACATGCAGTGaaaaaaattaagtCTGATGACATATGCTGGCGCTTATGGAGTACAATATGCTGTTTGCTTGAGGAATATATATGTAGAACAGGAGATGTCAATCAAGGTGGCTCTTTAAATTATGAGTTTCCTACATTGTTAGATGCCCTAGTGTTCCCACTAAAACATATTTccttaaacaaactaaatgaAGGCACAAAAAAAGAGCTGTTGAAAGTTTGGACAGAGCTTTATGAAGCATTCTCACGATCTGTGAACCTCCTTCCTGGCGTTGAAGTAAACCTTGCCCTGGAAGAGTTCTTTGCATATGTTCATACCTGTGTCAGCACTCTTTTGAATGGGTTTATTAATGATGCTAAGTCATTGAATATTCTGATAGAAATGGGATTTGTTTCACTTGGAAGTGTGGATTGGACAGATTCACTCTTACCTTTAACTCCTtcaaagttaaacaaaaaaaggaaaaacccCCTGGCAAACTTCAAATCATTTGCaaatgtcattatttttttattgaaccaGATATCACAGAAGTTAGAAAAAGGGGAAAGTTGTggttatgaaaaatgttttttgaggCTGCTTGATttgattgaaaagttttatgtcTCAGTCAACAACTCTTCACTTCTTGCTGATTGGTCACATGCATTAGTACCATCCTTGTCAACTGTGCTTAgttcttgtttaaaatactcCAATAAGGTGAATATGAACACTGAAAAATTGATCAGTACCATATTCTCAACATTTGAAATATCTTCTCAAAGTGTTTTCCATTCGGATCTCTTGCGGTTTTTAGAACCTCTTTTAATAGAGTGTTTTAAAACTGAGAGGAAATCATTACGTTTGAGAGCTGCTAAATTTTGGAATAATACTTTTGCCAAAAGTGCTAATCTTGATTATTCTGATGCTTTGAAAgacacatttttaaagcattctGCTAAATTGCATCTTATTTTACcaagttttataaatcgtGTTCATTCGCCGGATCTCCATGAAGATACTACACAGTTTTCAAATACTTCAGTTGTTGCTTCATCACcaagtttaaaacataaatcaCCCTGTGTTATTTCAcctgttaaaatatttggaagTTTTCTTCGAGACACTAATTCTCCCTTGTTAAAGAAAAGTCCTGTAAAAAAGCTGTTTCATTCACCATCTCATTTAAAAGAGAGTTGTACCAAGATAACAGCTAAAAGTTCAGTTGATTTTATTGAGATTTGTGAGTCCCCTAAACGCAGAAGGTTACTAACTGAACACCAAAAAGAGAAACTACGCGAGCGTCATAATTTTCCTGCCATGTACAACAGTCTTGATCAATCACAAGATAACACTCTTTTAAACTCTCTTACTCAAGATTCTGGAAGTCAGGCATCTTCACTATTGCAGCAATATGTTGAAGTTGAGAAAGGTACTAATGCTAttgcaaaaaatcaaattaatgttGGTTTTGATGAACCATTTAAGAACTTTAACCAATCGAACCATGAAGACATTGGAACTACATCAACTCTTAAGAATACTAATTTTGGTGACACAAAATTGCCATTTAATAGTGTAGGTAAAGATGAATCAGTATTTGATTCAAAGAATTCAGAACCACTTTTAATTGATCCTCTTTCAGATAATGCCACAGACACACTATCTCCAGAAGTTATCCTCTCATCCCAGGCATCAAGTCAAAGTCCTGCTAACATGAAACTCTCAATTCTTTCGCCAGCcactatgttaaaaaatgatcctCAAAGTTTAACTGTAAAACATGCAGTAGATGGAGATCACAAAAAGATTGATAGTGAAAGATCACATTTATGCCACGATAAAGAATGGCTCACTACTGGAAAATCTATCAATAAAACATATGAAATACGatctaaaaagttattatcaaaaaccaaaaaactgaaaaaagttaaaaatgctaatgagagaattaaagaaagtaaactgaactctttaaaaagtattaaaactgtttcagAAGACAAGAAAAGTGATCAAAGTTCAAACCAGTTCCTTGATACATTAAAAAGCACCTGTGatttaaatgtaatgaaaTCCCCAGAACCAAAACTAGTTTTGAACGAAGTTGGCTCAAATGAAAGGGCAAAAAGAAAGCGAGCAAAACTTACATTATCTCAAAACAAGCGAAAGAAACctgatttgatttttattaaaaaacatgaaacacTTTATGATCAAAAGCTGAATTTTAACAATCCTCTAGAAATTCTGATAgagaaagaagagaaaaatgattcaagttcgttaaaagaaaaaatttgtttagataGCAatctaaattataattatttcgGGTTCAgtcagaatttaaaagaagaagacttGCAAAAATGTGATAGCATTTTTGAACATAGagcaaaacaaattaatgataataacgtCATACAAAATAACGATCTTGTTAATAATCTCTATCTTCCATTAGCTTCTGATATTGCTGATAAAAAAGATGAGGCTAATTATGCCGGTTatgaattaacaaaaataaatactggTATTGAGTCAATTGAGACAGGTTTACTAGTGCCAAATGcttcaaaaacagtttgtgATGATGTTGAGGGGATTTGTGAAAAGGTTAATAGTCCAACACATCttcaaaatgctaaaaaatcttcaagcAGCTTGTTGTTGCCATTGTGTAGTCCTGTGTGTCAAGTTGTTTTTTCACAAAGCTCTTGTTTGAGTAGCCCAACAGCATCAGTTTGCACCTTATCACCAAATCTATCACCTGCCAATGgaattcttaaaaagaaacttaccCATGATATGCCTTCACCACCTATAAGCaagTCGAGGCACGTGACATTTCAATTACCACAAGGAACTTCTGACATCAAAGAAGATCATAATGATCTGGCCAAACCTTTGGATGACACCTCTAACAAGGGTTATACGCTAGTTAAAAagaaaaatgaattcaataaaagttCTGCCATATATCCTCAATTAGCCACCTGTTCAGCaccaattgaaaaaattcttccTTCGCTAACTTTTTCTCGTGGGATCGGTCACTTGGTTCGTGCACAAAACATTCTTACTATTGGCGATCTAAGCTCATTAACCGAGATTCAGATCGAAAATCTACCTATCCGTTCACCTAAAGTGACGACTGTAAGAAATGCATTAAGAACCTTTGCAAAAGGAAAGAGTCTTCCAAAATCTCCTCTGATAATAAAGCCTCCGACAGaacATTCAACGCCTCCTAAAGACGAGAAGTCGTTGACCGaagaagcttttttattgACCACACCTTCGCGCCGATTTGACAACGTGAAACCGACATTATTATTTTCTGATGTTGctgaaattgtaaaaacacaCGAAAGAATTAACGAAAATAGTTTATACGAAATAAATGCAACTGGTTTAAAAGAAACACCCGAGGTTGAAACAAAAGAAGATAAGGAGAACATCTTTCAAACCATTTTCGAATCAAAAGTAGCATCACCAGTCCATGCAGAGGACTCCGAGGGGTCGTTGATTAATGAAGTGATGCTAGTACCTAAAATAGACTCATTTAAACAAACTCTGGCTAACGATGAATTAATCCAAGCTCTTAAAACTGACTCATTTACTCAAACTGAATCGCAAAATGAGCTTACAGCTGCTTCAAGATTTGGTTTAACCGGAATTAATATGAGCGCATTGAACATTTGtgacatttttgaattagTGAGCCaactggattttttaaaaacaaaagctatGGAAGAACTAAAAACAAGATGCAGTGCGAATCTATGA

Transcript

BRAKERKRET00000005543

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5UIP0	Telomere-associated protein RIF1 OS=Homo sapiens OX=9606 GN=RIF1 PE=1 SV=2
E1C2U2	Telomere-associated protein RIF1 OS=Gallus gallus OX=9031 GN=RIF1 PE=3 SV=3
Q6PR54	Telomere-associated protein RIF1 OS=Mus musculus OX=10090 GN=Rif1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004399 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12231 all species →	Rif1_N	Rap1-interacting factor 1 N terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR022031 all species →	Domain	Telomere-associated protein Rif1, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22928 all species →	TELOMERE-ASSOCIATED PROTEIN RIF1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000723 all species →	Biological Process	telomere maintenance	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11138	RIF1; telomere-associated protein RIF1	-	DNA replication proteins	ko03032	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.