Gene detail

Detailed information of BRAKERKREP00000006147.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: XP_047129132.1, chromatin assembly factor 1 subunit B [Hydra vulgaris]
Species abbreviation HVIRI · all data for this species · gene families

Sequence

CDS

BRAKERKRET00000006147

ATGAGATTATACACTCCAGAAATTTCATGGCATCAAAAAGAACCAATTTTTAGTGTTGATTTTTGTCCTAATACACGTAAGCTTGCTAGTTCTGGTGCTGATTTTACAATAAAGatttggctaattaaagaacaaaatgaAGGTGATAGAAGCATTGGTGTGGAATTTCTTGCAAATCTTGATCGGCATGTTAAACCTGTGAATGTTGTAAGATTTTCCCCTAATGgaTTGTTGCTGGCTTCTGCAGGAGATGatggaGCAATAATACTTTGGAAACTTAATGCCAATGAAAAACCATCTTTGTCATTTGGTAAAGAAGAAGTTGAAGATAAAGAATTATGGAATGTTCATAAAATGTTGAGAGGCCATGTTGAAGATATTTATGACTTAGCATGGTCTCCAGATAGTTCACAGCTAATAACTGGGTCTGTGGATAATAGTGCAATTATATGGGATGCAATTAAAGGTCAAAGTCTAAAGATTCTAACAGACCACAAACACTATGTTCAAGGTGTTTGTTGGGATCCTCAGGGATATTACTTAGCCACTCATTCCAGTGATAGaacatgCCGCATATACACTGCTGCTAATCCTAAATGTATATATAgcataagtaaaaataatacatcCTATCTCAAAGATGGCCAAcTTGTAAAGTGCAAATATTCTCGAATGTTTATGGATGAAACAATGCAGTCATTTTTTCGAAGATGCTCATACTCTATAGATGGTTCATTCTTGTTTCTTCCAGctGGTTTGTATGATGGGGATGAAAAGCCTAGAAAAACTACATATGTTTTTGCACGTGGTTGTTATAGCAAaccTATACGACATCTTCCTGGACCAAAAAAAGCCACTTTGGCTGTAAAATGTTCACCAGTTGTTTATGAGTTGattagagaaaaagaaaatattaatccAGCAAGcgaaaaagatgaatttttaagGCTGCCTTATCGCATGGTGTTTGCAGTAGCAAGTTTAGATTCTGTTACATTATATGACACTCAGCATGATTACCCTATTGGCTATTGTGCTAACATGCATTACGCTTCTCTTACAGACCTTGCTTGGTCTTCTGATGGTAAACTATTAGTGGTTTCTTCCTTGGATGGCTATTGTTCTTTTATTAAGTTTGAAGAAGAAGAGCTTGGGATACCTATTAAATATGATCCTATTGAATATCAAATGAATCaagcaaaaataagaaaagctaACCAGGacaaaaaagagaaacaaGCTGATGGTGTAAGAATTGATAAGAAAACTCCAGAAGTCTTTGATAaaaaagatttgaaagagaaaataaaaatcgatCGTAGCCAAACAACTATagataagttatttattactCCTATTAAAAAGCGCAAACGTATAAATAATTCTGACGAGAAATCAAAAGAAAGCCCTGCAAATACGACCGAGGAAGCTGTTATATTGGTGGATGACGTTGTAACTGCATTGCCAGAGAAAtGTTTGTCTGAAAATGGTCTGTTTGAAAGCGAGAAATTTGAACCCTCATCGTTAAACAATGCACTGGCAGAAATTTCCACTGCATCAACAACTCTGGAGACAAATAGGATTATGAATAAACCAGACACTTGCAATGATTCGAAACAAGTCAGAGTTGCGTCAAGTCGCACTGAAACTATACCGCTTCAAACAACCCGGATTAACAGCAAACCTCCGAAACGTGTAAATGTAACTACATTACAAACATTCACACCAACAGAACCAGAACaatctcctaaaaaaaatcaagctgttttgcttttatcgCCTGCACTTTCACCGAAACGTCCAAAACGTGTTAAGGTTACAACAATATGCACTTTTAACGCTCCAAATCCTGCAGAAAATATTCCTAAAAACGATAATTTAGATAGTAGTTCAAACATGATTACATGTAACTCAGGGACTACTAAAATATTCGACTGCTCAAAGAATTCCTCTCTAAATACGTGTAGTACTGTTACAGATGAAAAGCTCGTAACAAACGCTGAACAATATTCGCAggatattaaaataaacaatggTTTCACTGAACAAGCGGAAAAACAAATGacagaaaaaacaataatggCTGATACTGAGAGTACGAAAGAGTATGATGTGATAGTATTGGATTAA

Transcript

BRAKERKRET00000006147

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q13112	Chromatin assembly factor 1 subunit B OS=Homo sapiens OX=9606 GN=CHAF1B PE=1 SV=1
Q9D0N7	Chromatin assembly factor 1 subunit B OS=Mus musculus OX=10090 GN=Chaf1b PE=1 SV=1
Q5R1S9	Chromatin assembly factor 1 subunit B OS=Gallus gallus OX=9031 GN=CHAF1B PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005167 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045145 all species →	Family	Chromatin assembly factor 1 subunit Cac2/CHAF1B/FAS2	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR001632 all species →	Domain	G-protein, beta subunit	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15271 all species →	CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006334 all species →	Biological Process	nucleosome assembly	Interproscan
GO:0006335 all species →	Biological Process	DNA replication-dependent chromatin assembly	Interproscan
GO:0033186 all species →	Cellular Component	CAF-1 complex	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10751	CHAF1B; chromatin assembly factor 1 subunit B	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.