Gene detail

Detailed information of BRAKERKREP00000006572.1 in Hydra viridissima

Genomic Location: :...
NR annotation: XP_047128453.1, leucine-rich repeat serine/threonine-protein kinase 1-like [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERKRET00000006572

atgaaaacagcaAAAGAACTTGGTCTGATATTTACTTTTGAAGGGGatattttacacaaatttGCAGCTATAGATAATGCTAAATCATTAGAAAAGTATCTTGATTATGGATGTCATGGAAATATAGAATCAGTTGATAAAAAAGGAAGAACAGTACTTCACATTGCTGCCAAAAAGGGAAGTCTTAATTGTGTAAAGTTGTTGTTGAAAAGAGGAGCTGACCCAAACGCCATTTCAGGCATTGAAGATCATTGTTcgacaCCTCTTCACCATGCTGTTGCTCGAGGTCATATCACCTGTGTTGATACTCTGCTTGAGTATGAAGTAAACTTAGAATTAAAGAACAGTATGGGGAAAAAAGCAATTGATCTTGCCATAGAGACAAATACAAGTGATAGTCTTCGTTGTGCTAATCGTATTAAAAGAGTAATTGAtgagcaagaaaaaaaaattgaaaatgacaaAGCGGAAGctcttttTGATTTGGTTTCTGTTGGAGATTTCCAAAATTCAAAGCATACACTTGAATCTATAAAGGATCCATACTcaatcataaataaatactttcgTGGGTGTAATACACTTTTATATAGGGCTAGCTTCCATGGGTATAAAGATATTGTTCAACTACTAATAGACTACCGTGCTGATGGCAGACCTAATTCAGGAAGTGGACTTACACCTTTATATACTGCATGTTATCAAGGTCACTATGATGTTGTTGTCCTCCTTTCAAAGGTATTCCCTAAAAATTTAGCTCTGCCACTTGTTTTAGATCAAACATATCCTTTACATGCATGCATAATGAAAGGGCGAGAATATATTGTAGAATATTTACTAACTCTGCGTAAACCTTATGTATCTGATTCTGCAGAACCAATGAATTTATCAACTGGTGCAACGCCCAGAAGCTCCATTTTAAAtgCAACACAAGAGTACTATGTTGAGATTAATAAGCCACAAGGAAATGGTTTTACACCCTTACACATTGCTGTTATGTAtggaaatttaaatattcttaagaTGTTATTAAAATGCAAACCCTACATAAAGGAGGCtgaagAAGAAAAGTACCCAGGTTGTTTGGTTATTGATAAAGTGTGTGATACAAAAACAGCATTTCACCTTGCATTAGTTGGAGATAatcaaaacagtttaaaatgtgCAGAAATTCTTTTGGAAAATGGTGCtgattttcaaacaaaatttgagGATGATCAATCATGGTGCACTGCATTGGAGTATGCgtgcaaaaatgaaaaagttgaatttgtAAAGCTGCtattaaaacataaagttgAAGATGTTGGTGGTTGTGCTTTACAAGAAGCAATGCAAAATGACAAAGACACTGTTGTAAATGAGCTGCTTAGAGATGgtgtttttataaatgaagaaAGCAAACTTGTTGTTGCTGCATGTGAGCTTGATCGTAGATTAAATCCTGTATCTATATCTTGGAAGAATCGtcatataaaaaacattaaagataaATGGATCTTGAATGCAGCTTTGATGATGAATTCACACCTAGgagattttgtaaaagaaaatatctccCTTCAGATAAAAGTCATTACACATATTGTTTTATCAGAAAATTCTCTGGAATCAGttccaataattttatttcagctgccttcattaaaaaagctaaatctTTCACACAATAAACTTACTGAGTTGCCTTGTGAAATTGATGATAACAGTGATCCATTTTTATCTAGCAAAAAAGATTATGAGAGTAACAACCTTTCGATGAACTGGAATTGTCCTAGTCTAGAAGAATTGGAGCTTCaatataattctttaaaaacacttcctaaaaatgtttttaggatGCCAATGTTGCAAGTTGTAAACTGTGGATACAATCAAATATCTGATTTACCATTTGAAATGTGGATTGCAGAGTCTTTGAAAACTTTAGTACTTGAACACAATTGCTTAACAAACTTACCAATTTTTGTTAGTGATGAATGCATTACAAGATTTAGATTGAATCAAGTTAAGAGGAATGGaaaaaaaaattttaaaaatgaaaaagaagctGAAAAGATTGATGATCGCAGTAAGAAAAATGCGTTTGCAACATCTAGAGAGTTTCTCTACAGCAAAAGACCTACCTGGGAAGGAGAATCAGATGATTCAGATGATGATGAATttgattatcttaaaaaatctgGTTTAAACAAGCTTGACTTGTCCTGTAACCAGTTGACAAAAATCCCTTTAGGACTTGCATGTCTTGCACCAAATTTAGCAAAATTGAACTTAAGtcataataaaatatctgAAGTGGATTGTGTTAATTTGTTTCCAGAGCATTTAAGCTCTTTGGAGCTTGCTGAAAAcaacatgaaaatttttaacttatctaATATAGGTAATCTTGGGTGTTATATGCTTGTAAAAAAACAGGTTAGGCAACGAgtatctttttcaaatgaaatctttttgtgCCAGCATCGCAAGCATAGGGagttaaatgaattattgCGACTTGATCTCTCAAAAAATTGTCTTGAGAGTATTGGTTTGTTGGTTACAACTGTTAACCATAAGTCACAGGTCTTTTGTAGAAACTTAAAGTCATTAGATATTTCTCATAACAAACTGAATAATTTGCCTGCTGGAATTggaaagttaacaaaattagaaacaCTCATTGCAAATCACAATCCTAACATAAGTACTCTCCCTTTTGAGTTGGGTCTTTGTTCAGAGATTTATGTGTTGACACTTGATAATGtccatttaaaacaacttcCCAAATATATTGTAGAAAATTATGACAGAAACAAGGATTACAAAGCATTGATTCGTCATTTGAAATCATTGCATGACAAtgCAGTACCATTTCCTAATATTAAATTGATGCTTGTTGGTATTCATGGAATTGGAAAAACTGCTTTACTGATGTTATTACGGAGAGAAGGATATGGGAGCTACCAACAGCCAGAGTATAAACTGCATTTTTCTGATCGCCTTATAGATAAAAGTAGCAATAAAGCAACAAGTAACTTAAGTACAGTTGGTGTGGACGTTTGTGATTGGGAATATGGgaaaaaaccaattaaattcAGTACATGGGATTTTGCTGGTCAGAGTGAATACTATGCAACTCATCAATGTTTTCTTTCCCAACGTGCTATTTATTTGCTGATATGGCGACTCACAGATGCTTTAGATGGAATCATGCAGCTAGAATCATggcttttaaatattcagagTCGTGCTCCTAATGCAACAGTACTTATTGTTGGAACACATGCtgataaagttgataaaactGTTTGTGAAAATTATCGAAAGGTGATAAAAGAGAAAttcatatctttaaaaaatggtggTAGTATTCTTAATCCTCAAGATAAAGGGTTGCCTAATGTTGTTGATGTCATTGAAGTGAGCTGTGAAACAAGTTACAATATTCCAAAGCTACGTGACCTGATATATAACACTGCTATGAATATAAAAGGATCAGGAAAAGAAGGTATATGCTTAATGGAGCAGTCTGTCCCTGCTTCGTATATTGCTGTAGAAAAGGCCATTTCAACAATAGCTTCTAAAATGAAGGATGATATTCCTGTCCTTAACGCAAAAACTTTTCGGTCAAAAGTGTATGAACAGCTGCAATTGCAAAAAGCAGAGCTAAAGAATGGAGATGAAGAGCTTGATCAAGCTGTTCATTTTCTTCATGACTAtgGTACTCTGTTACATTTTGATGACCCTACTTTGaatgatttgtattttatcaacccACAGTGGCTGTGTGACTTGTTAGCACatattattactgttaaaaatgtgaacccttgcataaaaaatgGTTTGCTAAAAATAAGTGATCTGCAACATCAGATTTTCCATGGTAGTCGTCAGTTTCCTACATCCATGATATCAAAGTATATTGAGCTTCTAAACAGATTTGATGTTGCcataaaaatttcagataAGTTTTTACTAGTTCCATCTCTTTTTCCTGACCAACAAAAAGAATGCCTTATTGTAGCTGAGAATCAGTCTTCCTTGTTACAAAATGCAATGAACATTTCTACCTACCTGCAATGCGAAGTATTTCGGCGGCAATATCTGCTTACATATGTTCCAAGTGGATTATGGGCAAGGTTGCTCACAAGGTTGATTGCAGATGATCGAATATGTAAGATTGTGTCTTTATGCTGTGAAGTCCAAGGCCAAAATAATGTTGATGAAAATCAAATCCTAATGAAAGCAGCCCCCCCTGAATGGGCTTGTTGGAAAACAGGCATTGAACTGTCATGTTTTGGAATTAAGCTGTTAAGGGTTTGTCAACTTGAACCAGAAGTAGCTTTCTACGGCTCAAATgCATCATCAACATGTGTCTTTGTTAAGAATCCTACTGTAGATTCATCACAAAGAGTAACAATTGAAATCATAGCGCCCAgtgttacattaaaaattgataaatttattttgaaccaATCTGGTAGCAATCAGTCagAATCACAAGATCAATCAATGGTTGGTTTCCGTGTAAAAAGTGTACATTACAATTCTCATTTGAATGCTTGTAAATTGCTTGTTCTTACAATTGAACATATTGACAACTTACTCGCAGAGTGGTATCCACAACTTGATCGTCTAATCGATGCTCATGGAATCAAGGCTGTTAGAAGGGTTTCATTTTGCAATAAATGTCTTCAAAGTGCAATATTTACTTCAAATACTAATGcaaatgcaagttttttacttaatttctCTAGTGATCTTTCTGAAgatgaaattgaaaagttaaaaggtATTTatgaatctaaaaaaaaatgcatagtTGCCTTTGAACTTGAGCAGGGTGCTAAGAATTTGAAAGAGAGCAATGAGCTAATTTGTCCTTTTCATAACAATGTCGAGATCAAGTCAATATTTCCAGATTtgTGCTTTCTTGATATTGAAGTGGAATATGTTCTTAATGAGACCCAAATTAAAAGAGGAAAGTTCATTGCTAAAGGAGGATTTGGTGATGTTTTTGCAGCTGAAATTATACGTGGAGATTCCTGTGTTACAGCTGCAATGAAAGTTCCAGGATGTTCTGAAAAAGATCAACCTTTAATGGCCACCATGTTGTCTTATGATGCTTACAAaAGTATTCGTCAGGAGATTTCTATCCTTGTTACATTACATCATGAACatattgttaagttttttggAGTAGCTTCAAAACCATTTGCAATATTTCTAGAGTTAGCTCCAAAAGGCGCACTAAGTAATTGTCTGGATGATTTTTTAAGTGCTTGTAAAAGACTCTCCCCACATACTATAACTGAATCACTAAAACAAGTAAGCTCTGCTCTGAAATTTCTTCATCATCGGCGAATCATTTATCGGGATTTGAAATGTGATAACATTCTTGTTCGCAAGTTCCCTGATCCATCTGTTGAAGTATTCTCAGTGGCACAGGTCCATCTAATGCTAACAGACTATGGAATCAGTAGATCTGTGTCTATTGCTGGCAATAAAGGGCTTCAGGGGACTCCAGGGTACATAGCGCCAGagattataaaatattcagGCAAAGAAAGCTATTCagataaaGTTGATTGCTTTTCATTTGgttcttttatttatgaattgCTAACTCTGCATCGACCTTTTTACAACTTCTCAAATATGCATCTTGTTAAACAATATATGTTGGATGGGAAACGGCCAAAACTCACTCACACagaaaaaaaatatcctgtACTGATGCTGTCGTTAATGTATCGCTGCTGGTCCCATAATCCAGATGACAGGCCGACATCATCTGAAATCAATAGCTTGACATCTTTACATGAATTTCAATCTCTTTTggatattttagGATTAGGTGACCACTTTGATTTGCAATGCATTGTGACTAGTTACCCAAGTATGTGTAGCCATAATGTAGTCTCTAGTAAAAATCTAATCGGTTCTCATCTATGGTTTTGTGGTAGTTCAAATAATCAGTTATCACATTGTCTTGAAGGTGTTATCactattttttcttacaataatTACAAGTACACCCATGTAGTGAACCTTCAATTGAAAGAAAAGGTTTTGGTAGCTTGTTCAGTTGGTAGTACGATGTGGTTGGGTACAGAATTAGGATCTATTAAGGTCTACTGTGCATTAACTTACAAACTACTTGCAGTAGGGGATTGCTCACGTTTTGGATATATTCTGTGTATTGCACATTGTCCCATGTTTAACTATGTTGTCTTAACATTTTCCAATAGCTCTCTTCTTACTTTTTCTGACAATCTTAGTTCTTATAACTGCATCCAATCATGTGGGGACACTTCTGTTTCATCCTCTCCACACCCAGTCACTAAAATTATTGAACTTTTGTCTTTGAAGACCTGCTCGTTTAAAACTCCTATTCATTCCATCGCTATTGTTAGATCAAAGGCAGCAAAGTATTCCTCAAAAACAGATCTTACTCAAACAGAAGAAAGAACTGAGAATGAGATTCTAAACTCTAACAATTCAGAAACATCAAATTCATCAGAAGTATTTGAGTTATGGTGTGGTCAGGAGAAGGGACATATCTTAATTCTAGAAGCAAAAACACTCAATCTAATCCAGCTTCTTCCAATAAAAACAGGCGATTTATTGAGTTCATCACTTAATGATTTGACTGTCACCTTTTTGGAAACACCTCGTTCTTATGATTTATATACTCAAAACAAGAAGGTTAATGATTCAGCTGCATCCAGTAATATTTGGATGGTTGCCTTTCCCGGAACTCAAGTGGAAAGGTGGAATGTAGATACCCGCACAATCGAAGGAGTATTTGATGCAAGTCAACATGTAGTTTCGCTCACCTTAAATTGCGCCAAAacatcaaagaaaaacaaaataactaaagtttGCGATGCTCAAATTCAGTCTCTTGTAGTGGTTGAGAACAAAATGTACGTTGGAACATCttttggttctttttttacttgcgATGCTTACACGATGATTCCTTATACTTGGTTAAGATGTTACCAAGAGTTAATTAGCTTTATCATACCGTTTCGTATGAAAACCGACCCAAATGAAAACGaggaaaagtttattttaacttgtgGCCAAAAGTGTTTTGACCATTGGTTGCGAAACTTTGACCGAAAAAAGGTTACTTCCAGTAAAGAAATGACCGTGTTGACGTGGAGTACTAAGaatttataa

Transcript

BRAKERKRET00000006572

Protein

BRAKERKREP00000006572.1

MKTAKELGLIFTFEGDILHKFAAIDNAKSLEKYLDYGCHGNIESVDKKGRTVLHIAAKKGSLNCVKLLLKRGADPNAISGIEDHCSTPLHHAVARGHITCVDTLLEYEVNLELKNSMGKKAIDLAIETNTSDSLRCANRIKRVIDEQEKKIENDKAEALFDLVSVGDFQNSKHTLESIKDPYSIINKYFRGCNTLLYRASFHGYKDIVQLLIDYRADGRPNSGSGLTPLYTACYQGHYDVVVLLSKVFPKNLALPLVLDQTYPLHACIMKGREYIVEYLLTLRKPYVSDSAEPMNLSTGATPRSSILNATQEYYVEINKPQGNGFTPLHIAVMYGNLNILKMLLKCKPYIKEAEEEKYPGCLVIDKVCDTKTAFHLALVGDNQNSLKCAEILLENGADFQTKFEDDQSWCTALEYACKNEKVEFVKLLLKHKVEDVGGCALQEAMQNDKDTVVNELLRDGVFINEESKLVVAACELDRRLNPVSISWKNRHIKNIKDKWILNAALMMNSHLGDFVKENISLQIKVITHIVLSENSLESVPIILFQLPSLKKLNLSHNKLTELPCEIDDNSDPFLSSKKDYESNNLSMNWNCPSLEELELQYNSLKTLPKNVFRMPMLQVVNCGYNQISDLPFEMWIAESLKTLVLEHNCLTNLPIFVSDECITRFRLNQVKRNGKKNFKNEKEAEKIDDRSKKNAFATSREFLYSKRPTWEGESDDSDDDEFDYLKKSGLNKLDLSCNQLTKIPLGLACLAPNLAKLNLSHNKISEVDCVNLFPEHLSSLELAENNMKIFNLSNIGNLGCYMLVKKQVRQRVSFSNEIFLCQHRKHRELNELLRLDLSKNCLESIGLLVTTVNHKSQVFCRNLKSLDISHNKLNNLPAGIGKLTKLETLIANHNPNISTLPFELGLCSEIYVLTLDNVHLKQLPKYIVENYDRNKDYKALIRHLKSLHDNAVPFPNIKLMLVGIHGIGKTALLMLLRREGYGSYQQPEYKLHFSDRLIDKSSNKATSNLSTVGVDVCDWEYGKKPIKFSTWDFAGQSEYYATHQCFLSQRAIYLLIWRLTDALDGIMQLESWLLNIQSRAPNATVLIVGTHADKVDKTVCENYRKVIKEKFISLKNGGSILNPQDKGLPNVVDVIEVSCETSYNIPKLRDLIYNTAMNIKGSGKEGICLMEQSVPASYIAVEKAISTIASKMKDDIPVLNAKTFRSKVYEQLQLQKAELKNGDEELDQAVHFLHDYGTLLHFDDPTLNDLYFINPQWLCDLLAHIITVKNVNPCIKNGLLKISDLQHQIFHGSRQFPTSMISKYIELLNRFDVAIKISDKFLLVPSLFPDQQKECLIVAENQSSLLQNAMNISTYLQCEVFRRQYLLTYVPSGLWARLLTRLIADDRICKIVSLCCEVQGQNNVDENQILMKAAPPEWACWKTGIELSCFGIKLLRVCQLEPEVAFYGSNASSTCVFVKNPTVDSSQRVTIEIIAPSVTLKIDKFILNQSGSNQSESQDQSMVGFRVKSVHYNSHLNACKLLVLTIEHIDNLLAEWYPQLDRLIDAHGIKAVRRVSFCNKCLQSAIFTSNTNANASFLLNFSSDLSEDEIEKLKGIYESKKKCIVAFELEQGAKNLKESNELICPFHNNVEIKSIFPDLCFLDIEVEYVLNETQIKRGKFIAKGGFGDVFAAEIIRGDSCVTAAMKVPGCSEKDQPLMATMLSYDAYKSIRQEISILVTLHHEHIVKFFGVASKPFAIFLELAPKGALSNCLDDFLSACKRLSPHTITESLKQVSSALKFLHHRRIIYRDLKCDNILVRKFPDPSVEVFSVAQVHLMLTDYGISRSVSIAGNKGLQGTPGYIAPEIIKYSGKESYSDKVDCFSFGSFIYELLTLHRPFYNFSNMHLVKQYMLDGKRPKLTHTEKKYPVLMLSLMYRCWSHNPDDRPTSSEINSLTSLHEFQSLLDILGLGDHFDLQCIVTSYPSMCSHNVVSSKNLIGSHLWFCGSSNNQLSHCLEGVITIFSYNNYKYTHVVNLQLKEKVLVACSVGSTMWLGTELGSIKVYCALTYKLLAVGDCSRFGYILCIAHCPMFNYVVLTFSNSSLLTFSDNLSSYNCIQSCGDTSVSSSPHPVTKIIELLSLKTCSFKTPIHSIAIVRSKAAKYSSKTDLTQTEERTENEILNSNNSETSNSSEVFELWCGQEKGHILILEAKTLNLIQLLPIKTGDLLSSSLNDLTVTFLETPRSYDLYTQNKKVNDSAASSNIWMVAFPGTQVERWNVDTRTIEGVFDASQHVVSLTLNCAKTSKKNKITKVCDAQIQSLVVVENKMYVGTSFGSFFTCDAYTMIPYTWLRCYQELISFIIPFRMKTDPNENEEKFILTCGQKCFDHWLRNFDRKKVTSSKEMTVLTWSTKNL

Uniprot

Uniprot term	Description
Q9TZM3	Leucine-rich repeat serine/threonine-protein kinase 1 OS=Caenorhabditis elegans OX=6239 GN=lrk-1 PE=1 SV=6
Q3UHC2	Leucine-rich repeat serine/threonine-protein kinase 1 OS=Mus musculus OX=10090 GN=Lrrk1 PE=1 SV=1
Q38SD2	Leucine-rich repeat serine/threonine-protein kinase 1 OS=Homo sapiens OX=9606 GN=LRRK1 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13637	Ank_4	Ankyrin repeats (many copies)	Repeat	Interproscan
PF08477	Roc	Ras of Complex, Roc, domain of DAPkinase	Domain	Interproscan
PF16095	COR	C-terminal of Roc, COR, domain	Family	Interproscan
PF00069	Pkinase	Protein kinase domain	Domain	Interproscan
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR000719	Domain	Protein kinase domain	Interproscan
IPR008271	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR032171	Domain	C-terminal of Roc (COR) domain	Interproscan
IPR020859	Domain	Roc domain	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR003591	Repeat	Leucine-rich repeat, typical subtype	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24198	ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan