Detailed information of BRAKERKREP00000006664.1 in Hydra viridissima

Genomic Location: :...
NR annotation: XP_047128509.1, DNA-directed RNA polymerase I subunit RPA1 isoform X1 [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
O95602DNA-directed RNA polymerase I subunit RPA1 OS=Homo sapiens OX=9606 GN=POLR1A PE=1 SV=2
P91875DNA-directed RNA polymerase I subunit RPA1 OS=Drosophila melanogaster OX=7227 GN=RpI1 PE=1 SV=2
O54889DNA-directed RNA polymerase I subunit RPA1 OS=Rattus norvegicus OX=10116 GN=Polr1a PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00623RNA_pol_Rpb1_2RNA polymerase Rpb1, domain 2DomainInterproscan
PF04998RNA_pol_Rpb1_5RNA polymerase Rpb1, domain 5DomainInterproscan
PF05000RNA_pol_Rpb1_4RNA polymerase Rpb1, domain 4DomainInterproscan
PF04983RNA_pol_Rpb1_3RNA polymerase Rpb1, domain 3DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR006592DomainRNA polymerase, N-terminalInterproscan
IPR000722DomainRNA polymerase, alpha subunitInterproscan
IPR007081DomainRNA polymerase Rpb1, domain 5Interproscan
IPR015699DomainDNA-directed RNA pol I, largest subunit, N-terminal domainInterproscan
IPR045867FamilyDNA-directed RNA polymerase, subunit beta-primeInterproscan
IPR042102Homologous_superfamilyRNA polymerase Rpb1, domain 3 superfamilyInterproscan
IPR038120Homologous_superfamilyRNA polymerase Rpb1, funnel domain superfamilyInterproscan
IPR007083DomainRNA polymerase Rpb1, domain 4Interproscan
IPR007066DomainRNA polymerase Rpb1, domain 3Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19376DNA-DIRECTED RNA POLYMERASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003899Molecular FunctionDNA-directed 5'-3' RNA polymerase activityInterproscan
GO:0006351Biological ProcessDNA-templated transcriptionInterproscan
GO:0001054Molecular FunctionRNA polymerase I activityInterproscan
GO:0005736Cellular ComponentRNA polymerase I complexInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K02999RPA1, POLR1A; DNA-directed RNA polymerase I subunit RPA1EC:2.7.7.6
Transcription machineryko03021deepkoala

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