Gene detail

Detailed information of BRAKERKREP00000007000.1 in Hydra viridissima

Genomic Location: :...
NR annotation: XP_047137957.1, C-1-tetrahydrofolate synthase, cytoplasmic-like [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERKRET00000007000

atgtgGAATTTAACCAAGTTGCCTCTCAAAACCCAAAGACCAGTTCCTAGtgATATTTCGATATCACGCTCTCAAACTCCAAAGAACATTGGTATTCTTGCAGAAGAAATTTGCTTATTGCCAGATGAAgttgAACTTTATGGAAAATCAAAAGCCAAAATATCTCTTTCTGTATTGGAGCGTCTAAAATCTTCAAAGGATGGAAAATATGTTGTTGTTACAGGaattaCCCCAACTCCGCTGGGTGAAGGAAAGAGTACTACAACAATTGGGTTAGCACAAGCTATGGGATCTGTTTTAGATATACAAACATTTGCCTGTGTACGTCAACCTTCTCAAGGTCCAACATTTGGAATAAAAGgggGAGCTGCAGGGGGTGGTTATTCCCAAGTTATTCCTATGGAAGAATTTAATTTGCATTTAACTGGTGATATACATGCCATCACAGCAGCAAACAACCTTCTGGCTGCTGCTATTGATGCCAGAATGCTCCATGAGGCAACACAGAAAGATATGgctCTATGGAATCGACTTGTTCCAGTAAAAAATGGTGTCAGAACATTTGCCCCTGTTATGTTTAAAAGGCTTAAAaaactagGTATTAACAAGTCTGATCCTGATAGTTTAACGTCAGAAGAAATCAGTCAATTTGTTCgattgaactttaaaaaagatactaTCACCTGGCAAAGAGTAATGGATACTAATGACAGATTCTTGCGGAAAATAACGATTGGTCAATCTCCAACAGAAATTGAGCATGCTCGTGAGtgcCAATTTGACATATCTGTTGGTAGTGAAATAATGGCCATTCTAGCTCTGACTACAAGTTTAAAAGACATGAGAGAAagACTTGGCAATATTGTGGTGGCCAGTGATAAAGATGAAAATCCGATAACTGCTGATGATTTGGGTGTTGGTGGTGCACTTACAGTTCTGATGAAAGATACAATTAAACCCAATCTGATGCAAACTCTGGAGGGAACTCCAGTCTTTGTACATGCTGGTCCATTCGCAAATATTGCTCATGGTAACTCATCTATAATTGCTgataaaattgcattaaaaatggtTGGTGAGAATGGATTTGTGATTACTGAAGCTGGATTTGGAGCTGACATAGGAATggagaagttttttaatatcaaatgtAGAAACAGTGGTTTGATACCAAATTGTGCTGTAATGGTAGCAACAATAAGAGCATTAAAAATGCATGGAGGTGGTCCAAAAgTTGTGGCAGGAACTCCTCTCCCTCAAGAATATAGCACTGAGAATGTGGAGCTGGTTAAAAATGGATTCAGTAACTTAAAGAAGCAAATTGAGAATGCTTTGTTTTTTGGAATTCCTGTTATCGTTGCTCTTAACAAGTTTCActcTGACACAGATAATGagttaaatattgtaatagaACTTTCTAAGAAAGCTGGAGCTGCAAATGCTGTTGTTTGTACTCACTGGAGTGATGGAGGTGAGGGTGCAAAAGAACTTGCTAAAATGGTGGTCAAAGTATCAAACCAAGGAagcaattttcaatttctttatgaattaaagCTTCCTCTTGAAgagaagataaaaattattgcatgCAAAATATATGGTGCTGATGGCATTGAGCTGTCGGAGAAAGCAAAGCGAAAACTAGAAACCTATACAAAGCAAGAATTAAAAGATCTTCCAATGATAATAATTCCTTTATGTTTGCAAAGGACGtcagttgttaaaaatgatgcaTCTAGTAAAGTTTATGGGACTGTTGcttaccaatattttttatacaacacAGAAGAATTGACATGCAGAATCATATTGTCAAAAACTAGAATGGTAAGTATAAGAGGATTAACTGTGGAAGTACTGTCAGATAACGGAACAAACTTTGTTTGTGGAAATAGTGAAGCAAAAGAACTTCTTAACAACttagataaagataaaattaacaGTTCAATAGTCAACAAAGGAATCAAATGGTATTTCAATGCTCTCTTAGAACCTCACCTTGGCGGTGTATTagagataataataaaagctGCAAAATGA

Transcript

BRAKERKRET00000007000

Protein

Uniprot

Uniprot term	Description
P11586	C-1-tetrahydrofolate synthase, cytoplasmic OS=Homo sapiens OX=9606 GN=MTHFD1 PE=1 SV=4
Q3V3R1	Monofunctional C1-tetrahydrofolate synthase, mitochondrial OS=Mus musculus OX=10090 GN=Mthfd1l PE=1 SV=2
Q5R8P0	C-1-tetrahydrofolate synthase, cytoplasmic OS=Pongo abelii OX=9601 GN=MTHFD1 PE=2 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05380	Peptidase_A17	Pao retrotransposon peptidase	Family	Interproscan
PF01268	FTHFS	Formate--tetrahydrofolate ligase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR008042	Family	Retrotransposon, Pao	Interproscan
IPR020628	Conserved_site	Formate-tetrahydrofolate ligase, FTHFS, conserved site	Interproscan
IPR000559	Family	Formate-tetrahydrofolate ligase, FTHFS	Interproscan

PANTHER

PANTHER term	Description	Source
-	-	-

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0004329	Molecular Function	formate-tetrahydrofolate ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01938	fhs; formate--tetrahydrofolate ligase	EC:6.3.4.3	One carbon pool by folate	ko00670	deepkoala