Gene detail

Detailed information of BRAKERKREP00000007167.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: XP_047132297.1, centrosomal protein of 290 kDa isoform X1 [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

BRAKERKRET00000007167

ATGAGCTTATTAGGAAGTAGCTCTGACGATTTTGTGAAAACTCCACTTGTTGTTTGGATTCAATCTTACTTAGATGTaccaataaaatcaaatactgATATTGTTAATGGAGTACTTCTCAAGGATGTCCTCATGCTTATTGACCATGCTGTTTTCTCAGGAATTCCGCTCAGGCATAATGTGGATGGAATCTCACAGAGAGCACAAAATCTTGCAGAAATATTACACACAATCAAGCGTTTTTACcagGAGAAACTTCAGCAGTTGATTGTCATGAAAATGCCAGATGTCCTTTTGCTTGCCAGAGAACCAGAGAATGaacaGTCTTATTCAGAGATGAGCTCTATTCTTCTCCTTATTCTGGGATGTGCTGTTCAATGCGAAAAGAAGGAAGAGTTTATTGAGCATATCACTGAGCTTGATGTCACAGTGCAGAGAGGTTTAGTTGCTTACATACAGGAgATTACTGAAAATGCAGAGAATGTTATTTCATATCCTGTGAATGATATTCCTGATATGTCACTTGAAGATTTAATCCCACTGTCACTGAGTTTGTATTATCGAGTCCAACGTGTTTTAGAACAAAGAGATGAATATGTAGAGactaTTCTAGACTTAGCATTGTATAACAATAATGAGGATGTAGATAAGGATTCTACAAGTTTACACTCACGCAAAGCTTTGAGTCCACATGCAAGTTTCCGTTCCCAGAACATTCTTCAAGCGAATcgacaaaaagtttttaacttacaGACTGAgctAGATGACAGATCTGTAGTGGTGGCAGAAATGAAGGAAGAAATTAGCCAGCTTAAAATTCAGCTTGATAACATTCGTCGTGAgaATAAGAGATtaacaactgaagctgcatgGTTGACAACTTGTCGTGATGAACTAGATGTTGCAAAAGCCCAGttagaaaacttcaacaaaattaacaCAGACAATTCAAAGATGAAGGAGAAAGTCAGAGAATTGGAATTTTGCAAGAACCAATATGAtGAATTGAAGCAGCAATTTGAACTGATATATGAAGCCAAAGTGGagttagaagaaaaaatggcAGGATCCACCACCTTGATCAATCAATATAGTAAGTTAGAAGAGAAAAATTCAAGTTTGCAATCTCAGATTGATGCTCTGATTCAAGAACGAGAAGATGATCATGTAAGAATTCGAGAACTTGTTGATCAAGTTGCAAAGTTAAGCATGGAAAAACAGGAAAGcATGATAGCTTGCTCAACAATGAATGCTGAACTGAATGGGCTTCGAATGCAGAAACAAGATGATGGCATGAATGTTCCTTTACTGGTTGAATACAATCAAACATCTTCAACAGATCTACTTCGCCTGGAAAGAGAAAACAAACAGCTTAGCCTgattattgataatttaaagaCAGGAATAccaattgataaaattaaacaactcAAAGAATCAAATGACCAAATGTCTGAGAGCATGTTCCAATACAAGAACATGATTACTACATTGACTAAGGCATTGGTTCAAATCAGAAGATCCAGTGAAGCACCTGATGAAagcTTGCTTTTGGAGAAAAATGTCAACCGAGAACTTGGTGATGTCATAGGAaatcaaagtgaaaaaattacaaagctTTATAGTTCCCAAGCTGTCTCTTCTTCTGAACTTGATGATATTGCTAAAAAGTTAGCTGATCAAGGGTTAATTCTTGacttggaaattttaaaagaggcTTTGGAGACTGCTCCTATGCTTTCACTTTATACAAATGGAAGGTTCTGTGagtcaaaaaaagttgagaaGCAACCATCACATGATAATATCAAGACACCATATCAAGGAGGCTCAGTGGCAATTGAAGAGagAATGACAAACTTGTTGGGTGCAGCTGATGAAAACACAAAGAAAATTACCAAATTACTCGATGAAAAAGTGGAGAGAATAAGGACTCTAGAGTCTAAaaTGATATCAATGGAAGGTAATGCAAAAGAACTTGAAAATATGCaagcaaatttgaaaattaaagaaaacaaattgaatGTTTTACATGAAATGGTTAAATCATCAGTGGAAAAGATTCGCTCTCTTGAACTTGAaTTAGAGCACTCAAACACAAGCTGTTCTCATCTAGAACATGAGTTAAAACTTAAGAATGAGCGCATCAATGTTCTAGAAGCAAGcttaACTGAACTAAGTGCATCAGCCAACAGTAAACAAAATGAGCGAATTGCTTTGTTGATGAAATCCTTGGAATTTCGTGGAAGTGAAATTTCTGAGCTCGAACAAAAAGTTGATGAGCTGATGATTGTAAATGAGAAGCTTAGATCTACAAACAAGACAAAAAGTGATACAATACAAAAACTAGAAAGccaaattcaaGAAATGACACTCAACCCAAATGAAAcagaaaataatgatataattaAGTCTCTTCAAAAAGAACtactccaaaaaaaaactgagatTGATTCATTAGAAATAAAAATTGAAGAACTGGTAAATAAgttgcttaaatttaaaagagttaatCAGCACAACCATGATAAGTCCATGCAATTGGAACTCAAAATTCAAGACTATAATGATGTTGTGCAAGAGAAGGAACGAGTTCTTCGACTGATagaagacaaaaataaaaaatgtttagatttAGAGACAGAgatCGATAGCttgaataatgaaaaaaacaagcttGAAAGAATGCTGAAACAAAGTGataagcaaaacaaaatagCTACTCAAAgtttgtgTACACTTGAAGCATCTATTGTAGATCAGAGTAGTCTCAGTAAATTGATCAAGTTGAAGGAGAGTAAGTTAGAAACCATGCAGAATGCAATAGATGAAAAGGATGACCTTATTGTAAAGCTTGAAACCAAGTTGTTAGATAGTGATGGAAAAATTAAACGTCTCGAgcagctttttaaattaaaagaagataaaCTTCAGCAAATAGAAAGCagCATGGAAAAGTTCGAAGATGTTGATGCTAAAAATGCAAAGCTGAATGCTCTGTTGCAACAAAAGGAGCAAAAGATTCAATTGCTAGAAGATAATTTGGATGAACTCAGTGAGTTGGCTCGATCAAATAAtcgtttaaaagaaaattcttctctgaaggacaaaaaaattgaaagtctTGAAGAGAGGATTCATGATTTAGAAGAGGCTGTTAAAATGAATGAAAGATTGAATCATCAAGTCAAGTTAAAAGAAGAGAATGTTGTCTTGCTGGAGGAGAAagTGGATGAATTGGAGATTCAGCTGCAGAAATCTGAGCAGATTCgtgaaatcattaaaaaaaatgctgaatcAGAAATCTTAAGGCTAAATGAAgaggTAGCTGAGTTCAATGATTTCAAAGTTAAGAGACAAATGAGTTTGCTACGTAGagatcaaaaaattacaaacttagAGTCAAggttgAATAGTTTTGCAGAAgagaaacaacaaaaagattcTTTCATTCAAGACTTGCAGTCAAAACTGGAGGGTACAATGATGCAATATCGAAAACTTGATCTCAGCAATGAGGAAAAAGACCAAAAGCTAATGGACCTTGACAtgagGGTTAAGGAGTTAATGCACACCTACAAAGAAAATCAAGAGCTTTCACACACTCTTCAAATGAAAGAGGAGGAACTTCATGAACTAAAAAAGAAGGTTGAAGATTTCGAAGAAAGCAGAAAAAGAAGCTTGCAACAAATTGACAACAAAGAAAAGAGCATAGTTGAATTGCAAGAAAGGTTGCAAGAGACTCTCATGTTCAATAATCGTTTAAACTACAGCGTTAAAGCCAGTGAAGTAAAGGTTAATACATTAGAAAAACAGGTACTTGATCAAGAGGAACTCATAGAGAAGTTATCCTCAtcaattaagttaaaagatcGCTCAATTGAAAGGAGTAACATAAAATTGGTAGAGCTAGaagaagaattcaaaaaacagGCTGCAGAACTACAATcacagtaTAACAAATTCAACCAGAAAAATTCATTGATAGAAGAACAAAGCACTCCAAGTGAAAAGGACATTTCTACTTCAATGCAATTTGAGGAGATATCAAAGCAGTTAAAAGAGCAAATTGAACTTACAAAAGAAGCCAACTTAAAGGCTGCTGACCTCAAAAAAACaatttatgaatttgaaaatgagAAGCACAAATCTAAATTGAATTTGCAAGAAAAAGATGGTGTTATTGCTGACTTAGAAAGGAGAGTTGAAGAACTGCAATTGATGCTTTCTGGAAGCGATAAGCTGAACTttattctaaaagaaaaaaacagtcAAATTGCAATACTGCGCCAGAGTTTAGATGAGTATCAGAGACTAAGCGCACAGCTTGAAACAAGagtAGAAGAAGTTTCTTCAGAACGAAATCGCTTTATGACAGCTTTAAAGCAGCAAGAGGAGCGGTTGAAAACACTTAAGGTTCAGTTAGAAGAATATGTCAAACTTAACCATAAGGCAAGCAATGATCTTCAACTTAAGGAAGAAACTCTTATTTCTGTTACAAAGAGCCTTGATGAAATGACACGAAGGAATAAAGATTTAGAAGAGGACATAAATTCCTTAGAGAAAGACCTTCATGACTTAAAGAGTACAGGTAGCCTGAAGAATATAACAAGTATTACTGAGAAAATTCAGCTAACAAAGCGAGCCAGGACGGAGCTACATATTCAACGAGGACCAATCACAACttctaaaacaattgaaataaaaatgTTGTCTAGCAAACCAGAAGATAtggttaatgaaaaaaatgaagttattgAGAGActtcaaaaagatattgaaataCTTGAGAAACAgaaatctCACATATCCACACTGATGTCAAATGTTTCCATGGAGAATGCGTTGTATCTTAGTGAGAATGAGTCACTGAAAAGCAACTATGAGCTCCTTACTCTCGATTATGAAGCTTTGCAAGCAGAACTGAgtgatattaaaaatcaatttcaggAACTTGATATATCTGCTACAAAGATTGCTCATCGATGTGAGCTTCTTGTTCAAATGAATCACACTttagatgaagaaaataaagctCTTATTGACCAGAATAACAAGCTTATATTGCAGagtagAGAGTTGCTAGTCACTACACTCCAATCTCGTGATCAGTTCTTAGATGATGAAAGAATCTTCTCagatcATATTTATGGCTTAGAACGTGAAAGAGAAATATTAGCAGAAAAGGTGCAAGCAGCTGAAAGAGCTTTACAAGACActggaaataaaaaGAAAGGGGCGCTTTGGCGTGgaaccaataaaattttcaagaaagttggattaaaaaagAAAACGTCTAATACTGACTTAGCAGagttttctaatgataatcAATTAGCAAATAGACGAAAGGACACATCAGCAGATTCAGTTGTTGTGGCTCCCACTCCTGCTACCATACGTGGTTTGCTTTCTAGAAGTCGGCAAGATATTTCAAAGATTGATCAGGAAATAACCAAGAGGCAGCCTTTCAGTAACGATTGCTCGTCAGAAAGTGATACATCGAGcaaatacagttttaaaaaacgtcCAAAATCTGATTTCTTTGTTTCCAATGAGTTCGAAAGTCCTTTgagtaaaacaaaagatttagtTCGAAGTTTGGAAAATCTCAGTCAAACTGGGATCTCTTTACAAAATGCGCCTGATGTAGAACCCAGTCCTTTGCCTTCTCTCGTTCAAGATCTTGAAGGGTATAAAATAACGACTCCGACTAAAACGGTTTCAACTGGAAATCAGTTACCTGAAAAATCGTCTACTGTAGAATCTTTGCATGTCGAAGGAAATAAAACGCCTATACAAAGAGTTCTTGTCAAGCAAATCACGGCAGCCGAAGTGTTGAAAACtccaaaagaaaatgatattgTGGTAGAGTGTATTGACTTTATGGCTCGACAGACTCAAGAGCAATCTCCAGAACGATCGTTAAGTTTTAATTCTGCAAAAGAATCAAATCCGCCCTCTGAACAACGCCATTCTGATGCTGTAAGATTGTTAAGTAACGAACCTCAACGTCGTTCTTCGATGCCTCTAAACGAAAAACGACCCAATGAAGTTTTAACAGATGATAGTGgagcattttatttcaaaagaaattattcgACAAGGAGCGAACGAAGCAGTAGTAGAATATctgaaaaatcagaaaatagACGGCAAGACATGCCAAACATTTTCTACCAACGAGATGCGCACGGCAAAAGTGTCTCCCCTCCAGTTCCCGCGTATTTTGGCAACCGCGAACAGCGTTCTTCTATCCGTCGTTTTGAAATGGAGCATATGGAACCTCGTCCTCTAAACAACGAGCTTGATAAAGAATGCGCTACTGATGACAATCGGAACAGAGTTAAAGGTGCAAACATGGAAAGTATTGACGAAAATTCTTTTCGACGAAATGATTCCATTCGACAAAGTAAGCGCAAGACTTGGTACGAATATGGCAAtgtttag

Transcript

BRAKERKRET00000007167

Protein

BRAKERKREP00000007167.1

MSLLGSSSDDFVKTPLVVWIQSYLDVPIKSNTDIVNGVLLKDVLMLIDHAVFSGIPLRHNVDGISQRAQNLAEILHTIKRFYQEKLQQLIVMKMPDVLLLAREPENEQSYSEMSSILLLILGCAVQCEKKEEFIEHITELDVTVQRGLVAYIQEITENAENVISYPVNDIPDMSLEDLIPLSLSLYYRVQRVLEQRDEYVETILDLALYNNNEDVDKDSTSLHSRKALSPHASFRSQNILQANRQKVFNLQTELDDRSVVVAEMKEEISQLKIQLDNIRRENKRLTTEAAWLTTCRDELDVAKAQLENFNKINTDNSKMKEKVRELEFCKNQYDELKQQFELIYEAKVELEEKMAGSTTLINQYSKLEEKNSSLQSQIDALIQEREDDHVRIRELVDQVAKLSMEKQESMIACSTMNAELNGLRMQKQDDGMNVPLLVEYNQTSSTDLLRLERENKQLSLIIDNLKTGIPIDKIKQLKESNDQMSESMFQYKNMITTLTKALVQIRRSSEAPDESLLLEKNVNRELGDVIGNQSEKITKLYSSQAVSSSELDDIAKKLADQGLILDLEILKEALETAPMLSLYTNGRFCESKKVEKQPSHDNIKTPYQGGSVAIEERMTNLLGAADENTKKITKLLDEKVERIRTLESKMISMEGNAKELENMQANLKIKENKLNVLHEMVKSSVEKIRSLELELEHSNTSCSHLEHELKLKNERINVLEASLTELSASANSKQNERIALLMKSLEFRGSEISELEQKVDELMIVNEKLRSTNKTKSDTIQKLESQIQEMTLNPNETENNDIIKSLQKELLQKKTEIDSLEIKIEELVNKLLKFKRVNQHNHDKSMQLELKIQDYNDVVQEKERVLRLIEDKNKKCLDLETEIDSLNNEKNKLERMLKQSDKQNKIATQSLCTLEASIVDQSSLSKLIKLKESKLETMQNAIDEKDDLIVKLETKLLDSDGKIKRLEQLFKLKEDKLQQIESSMEKFEDVDAKNAKLNALLQQKEQKIQLLEDNLDELSELARSNNRLKENSSLKDKKIESLEERIHDLEEAVKMNERLNHQVKLKEENVVLLEEKVDELEIQLQKSEQIREIIKKNAESEILRLNEEVAEFNDFKVKRQMSLLRRDQKITNLESRLNSFAEEKQQKDSFIQDLQSKLEGTMMQYRKLDLSNEEKDQKLMDLDMRVKELMHTYKENQELSHTLQMKEEELHELKKKVEDFEESRKRSLQQIDNKEKSIVELQERLQETLMFNNRLNYSVKASEVKVNTLEKQVLDQEELIEKLSSSIKLKDRSIERSNIKLVELEEEFKKQAAELQSQYNKFNQKNSLIEEQSTPSEKDISTSMQFEEISKQLKEQIELTKEANLKAADLKKTIYEFENEKHKSKLNLQEKDGVIADLERRVEELQLMLSGSDKLNFILKEKNSQIAILRQSLDEYQRLSAQLETRVEEVSSERNRFMTALKQQEERLKTLKVQLEEYVKLNHKASNDLQLKEETLISVTKSLDEMTRRNKDLEEDINSLEKDLHDLKSTGSLKNITSITEKIQLTKRARTELHIQRGPITTSKTIEIKMLSSKPEDMVNEKNEVIERLQKDIEILEKQKSHISTLMSNVSMENALYLSENESLKSNYELLTLDYEALQAELSDIKNQFQELDISATKIAHRCELLVQMNHTLDEENKALIDQNNKLILQSRELLVTTLQSRDQFLDDERIFSDHIYGLEREREILAEKVQAAERALQDTGNKKKGALWRGTNKIFKKVGLKKKTSNTDLAEFSNDNQLANRRKDTSADSVVVAPTPATIRGLLSRSRQDISKIDQEITKRQPFSNDCSSESDTSSKYSFKKRPKSDFFVSNEFESPLSKTKDLVRSLENLSQTGISLQNAPDVEPSPLPSLVQDLEGYKITTPTKTVSTGNQLPEKSSTVESLHVEGNKTPIQRVLVKQITAAEVLKTPKENDIVVECIDFMARQTQEQSPERSLSFNSAKESNPPSEQRHSDAVRLLSNEPQRRSSMPLNEKRPNEVLTDDSGAFYFKRNYSTRSERSSSRISEKSENRRQDMPNIFYQRDAHGKSVSPPVPAYFGNREQRSSIRRFEMEHMEPRPLNNELDKECATDDNRNRVKGANMESIDENSFRRNDSIRQSKRKTWYEYGNV

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P85120	Protein Daple OS=Xenopus laevis OX=8355 GN=ccdc88c PE=1 SV=1
Q9P219	Protein Daple OS=Homo sapiens OX=9606 GN=CCDC88C PE=1 SV=3
Q6VGS5	Protein Daple OS=Mus musculus OX=10090 GN=Ccdc88c PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002042 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19047 all species →	HOOK_N	HOOK domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036872 all species →	Homologous_superfamily	CH domain superfamily	Interproscan
IPR043936 all species →	Domain	HOOK, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18947 all species →	HOOK PROTEINS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030705 all species →	Biological Process	cytoskeleton-dependent intracellular transport	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0031122 all species →	Biological Process	cytoplasmic microtubule organization	Interproscan
GO:0051959 all species →	Molecular Function	dynein light intermediate chain binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25392	CCDC88A; girdin	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.