Gene detail

Detailed information of BRAKERKREP00000007470.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: XP_047142584.1, Fanconi anemia group J protein homolog [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

BRAKERKRET00000007470

ATGTCAATCAATATAAATGGTGATGTAGTGATCTTAGATGAAGCCCATAATATTGAAGATGCCTCCCGAGAAGCAGCTAGCTCAGTTATCACAATTTTAGAGTTAGAAGAGGCAAAGCTTGATCTACAATACATGATTGCCACCAAAGTGATTAATGACTCATATACTTGTCTTATGCTGTTGtgtgATGGAATGTTGTTTTGGATAGAAAGTGTTAAAGATCAACTTGAACAGCGAGGGTTCGAAGATGAAGCTAAAGTATGGACTGGCAAAGAAATCATCAAGATGTTTCAAGAAACAGAAAAGTTAAGGCTGTCTTGTGCTAGTGTTAAACTTTATAAGGATCAACTGATTGAGTTAACCAATGTAGAGCAGCAGGATAACACAAAGCAAagtttttttatttacagtacATTTGCAGAGTCAGAAATTCGAATTAGCTCAAAAACTCtgaatacaattttaaatctaatgaAGGTTTTAGAGAAGTTGTTTGATGACAATTATGATTATAGCAATGATTACAGAGCAATACTCTCGCGAACTGCAGTTATGGTTGATATGAACAATGagAGTGTTGGTGGTTGGAAACGAAAAAGCAAATCTCAACAGAAAGTGTGGACATATGAGATAAAATGGTGTTGTTTAAATCCTGCTGTGgtgtttGCAGAAATTGGCTTACATAGTCGTTGTGTCATTTTGACTTCAGGGACTTTATCTCCTATGTCATCATTTGCTTCAGAGCTAGGTGTGGATTTTCCAATCACATATGAAGGAAATCATATTATAGCTGATTCACAAGTATGGGTTGGAACTTTATCAGTAGGACCAAGTGGAAATGTCATCAatgcaaattataaaaattcagaGacatTTTCATTTCAAGATGACATTGGCAATATTCTACTACAATTATGCCAGgcCATTCCACGAGGTATTTTGTGCTTTTTACCTTCATATCACATGATGGAAAAGCTGCATAAAAGATGGGAGATGACAGGGTTGTTAGATAAAATGGCTGCTtcaaaagttgtattttttgaacctagaggaactgaaaaaaaagGTTTTGATGAAACACTTAGGCAATTTTATGAATGTGCAATGTTACCGGATAATGACATCACAGGAGCTTTGTTATTAGCAGTATGTCGTGGAAAAGTAAGCGAAGGACTTGACTTCAGTGATGACAATGCTCGTGCTGTTGTTGCAGTTGGTATTCCATTTCCTAATGTTAAAGACCTGTCTGTTATGTTAAAACGCAAGTATAATGATCTGTACACCTCAAAAGGCTTGCTAAGTGGAAATGATTGGTATGAACTGCAAGCATTTAGAGCTCTAAATCAGgcATTGGGAAGATGTTTACGTCATAAaaATGACTGGGGAGCATTACTAATGGTTGATGTGAGGTTTTCAAAAACACCAAAGTATGTCGGTGgttTATCCAAATGGATTCGTACAAAGATCAagcattttaatgattttcaaacatgttttttatctGTTAGCGATTTTGCTTATAGTCATCAACAGGGTTGTAGCTCAAAGAATGAGACATCCATTTTTAAGGATggacagaaaaaatttaatgatatacaagatcaatttaaaatcagtGAATCCTTTCTATCTCTACCTTCTTGCTTTGATGCTTGCAAAAGAAGTGAagttaaattgaaaaacatatCATCTACTACAGTTATGAACAAACTTGGCGAATCAATTAGCAAAGATGTTTCTTTCTACAATGATAATTTGAATAATGAGCGCATATTAGTGGATAAAAGCTCAAATGGTAACGAACAAAGCCAAAAAGATCTTTGTGAATCAAaagtttcaacaaaaaaatgtttttcttttcgtactccaaattcaaaatttaccTCTAAATATGCTGAAGATAGAATATCTTTTGTAAATTCTCCTTCACCAACAAAAGATGCAAGTAGCTCATTTGATAAGTTGTCTGGTCATGAATCTATTCATAAGTTTAACAAGTTCCAAATGTTTAGAACCCCTGAAAAATCCCTAGACAATAGCTTCAAAAGTGCACCTGATTCTATTTTTGATGATACCACGACTAGCACTTTTGTTACTAAAAGCATAACAACAATTGACAATCAATTACTCAATATATCGATTGCACCATTTGGCAGGAGCCAAAAACTATGCCCCACAATCTCCAAAAGGAATTTTGTATATCCTGTTTCTGACTCTGAAAAAGTGAACCAAACAAATTGCAAAGAGTTGGTTTGTGAAAATATGTCTAGTACTTCTAATTTATATTCTGAGTTTAAACAATCaattaattatcataattattcgAATCCCAAACAGCATTCAACTCCCAATATCTATTTAGTTAACAGTTCGGTAGATTGTAGTTTTCATGAGGATACTTCAGTTGTTGTTGATGAATCAACACAAGATTTGTTTTCTCAAGAACCAATAGAAAGGgatatatactttaaaacttcatacaaggaaaatatttcacaaaaactTGAACAAACAGATTTTACAGATAGAAAATCtgatgttaatttaaaagataaaaaaaagaaaactgacAATCATAAGAATCAAGTGAATTCATATAATCTAATGATTGAAGAGAATCAAAGTATTGATTCTTGTCAAACATTGTTATCAGGTGAGACTAGTCTAGcaagaaaatttgaagataaaaataacaaatttacttGTAAAGCCgttaaaaatatacatgaaAGCAATGAAGATGAAACTAAAGATTTTGCTGACGTTAAATTAGCTAAAAAAAGTGTGTCATTTCCCAAGCAAACTGAGAGTTTAGCTGTACGTCGAAAAAAGAGAGGCTATAAGAGGATTCTAAGGGAGACCCAGAAGACAAAAGATGAGATGAAACCAAGTCCTGAATTTCATTCTTTATCTACTGATGTGCGTAGTACCTTAGTTTGTGCAACCTGCAAATTGCTTCTCGTTCAAGGTGACTTTGAAGACGTTTCTGAATTGCTTCTCTCGAAGAAggtttttctgttaaaaaaatcatcgcCTTGTATTCAATTTAATGATACAAAGAGCACTCTTAATGGTTTCAGGTTAAATTCGTTTTTTGACGAAGGTCAGTTACACATACCGTTGTTTTGTCCTAACTGTGCAGTGCATATAGATTACGAAAACCTGTTACCTGCTGGTGTAAAAGTTATAAGTGTAAATGAGCGGCGTGAAGTAAAATCTTACTTGTTTCAAGACAGAGTCTCGACAGTTTCTTGA

Transcript

BRAKERKRET00000007470

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5SXJ3	Fanconi anemia group J protein homolog OS=Mus musculus OX=10090 GN=Brip1 PE=2 SV=1
Q9BX63	Fanconi anemia group J protein OS=Homo sapiens OX=9606 GN=BRIP1 PE=1 SV=2
Q3YK19	Fanconi anemia group J protein homolog OS=Gallus gallus OX=9031 GN=BRIP1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001317 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06733 all species →	DEAD_2	DEAD_2	Family	Interproscan
PF13307 all species →	Helicase_C_2	Helicase C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR006555 all species →	Domain	ATP-dependent helicase, C-terminal	Interproscan
IPR010614 all species →	Domain	RAD3-like helicase, DEAD	Interproscan
IPR045028 all species →	Family	Helicase superfamily 1/2, DinG/Rad3-like	Interproscan
IPR013020 all species →	Family	ATP-dependent helicase Rad3/Chl1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11472 all species →	DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0004386 all species →	Molecular Function	helicase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006139 all species →	Biological Process	nucleobase-containing compound metabolic process	Interproscan
GO:0016818 all species →	Molecular Function	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003678 all species →	Molecular Function	DNA helicase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006289 all species →	Biological Process	nucleotide-excision repair	Interproscan
GO:1990918 all species →	Biological Process	double-strand break repair involved in meiotic recombination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKREP00000007470.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.