Gene detail

Detailed information of BRAKERKREP00000007956.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: XP_047128177.1, uncharacterized protein LOC100208776 [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

BRAKERKRET00000007956

ATGAGTTCAACTACTTTACCATTGGCTATTACCACTGGCGTTGCTGCTCTTATGGGAAGTATTGCTGCTTGGAAAATCAAATCTTTATATGCATCACTTGAGAATAGCAAAGAAAAGGAGTTGACAGAAATTGTGCATGatttaaacattgaaaatattgctGGATTGCTAAAATCAAGTGACTTTAAAATTCGACAATCAGCTGAGCAACTCCTTTTAGATCGAGCTGCTCGGAAATGGACTCTTTCATATATCCTTAAACAATGCATAGTAGATGACATcaaaaaagtagttaaagCTGTTACAGCTATTCATCTCCTTGTCAAATCATCAGAATATGCAAAAGCAAAACTTATTAAGTTACAAGCCACagagattttaacaaaaactattgaaaatatCTCCAAAAACTTTGATTATACTTATCTAGTGCAGGagtgtaaagaaaaatatttagttgaaaaaGTGTTAAATCATTGCGTCGcatcacttttttatttattgctacACACTCCATCTGCTTTAGCTGAATTcagcaaagaaaaaacattcatCAAGGAGATCTTGGTTAATATCTTGGGTGATCATAGCTTCTATATTTCAACAGAAGTTAGAAGATGGTCTACTTATATTTTGCATCAACTAGTACAGCAAGAAGTACCTATTAAAAGCTCCTTGCGACAATGGGGGATCATTAGGAAAGCCACAAGATGCATTATTGTTACTGCTGGTGATATTCTGCAGATacaactttgtttacaaatacTTGTCCAGTATTTGAATGACAGTGCTGAGGAAATGGTTCAAATTTGCAAAGAGATGGCAACATTGGGTATATTATCACACTTAGTTGGTTTGCTCCGCAGCGATGATGACGAAAATGTTGTCCAATTATCTGCcattttaattcataatttttgctgttttgatGTAGATATACTTTATCTAGCGCAGATCCCAggttttgtcaaaatattatattctGTATTAAGTTCTACTGATTATGGAACGCAACATACAATACTTCGCATCTGTAATTACCTTTCAGTAGCAAGCTCAAAATTTCGCAAATCTTTACTTGACTACAAAcctttgataaaaaagttatcagtTTTTATGTCTTCCAACAACATTGAAGTGATGCGTGGTAGTCTTATGCTCATTCATGATCTGCTTATGCCAGATAAAAGTTCTATTCAAAAGTTAGTTAAATTAAATCCTGAGATCATCAAATCATTGGTAAAGTTGTCGTTTACTTGTAAAAATGACACAGTTCAACTTATTGCAGAAACACTTGGTTATCTATGCTCTTGTgagcCACTTCATTCTTTAATTCTTGAATATGGTGTAGTGAATTCAATTCTCCATTTTGCTAAAAGCAATGATGTTGGTGTGCAATTTTGGGCTTCAGCATTGCTCTTGAATATTTCTATGATATCTGACCAGATGAAAGAAACAATAATTCAAAATGGTGGAATTAGTATTTTACTTGAAATGGCAGTAAGTGTGGATGAAGTTGACCTACCAGATATAGCTACAAATGCCACAAAAACTCTTGTCATCCTAGGATACTTAGaatCAACTATAGATGTGAAGCTTACCTGTGGTCTTGAATCCAGCATTATTATTGATGGAAAAGAACATTGCCCAGGTAAACAAGGCATAAACCTGGTTTCGTTGGATTTCATCAATTATAAGTATTCAAAAGGTCAAGTAATTCAACCATCTGAGCTGGAAGTTTATCTTACTGAAAATATGGACACCATAAAAAAGTCAGACTCCTTGTTTATGGTTACACAAGGCGATTGCACTGTCTTAGATTCAGTAGATCAACCTTCAATTGTTTATAAGAAATTCATGAGAAATGAAGATTTCAGTTTTCTCTGCTCACCTGCATGGTGTCTCATTCTCACATCACAACACTGTGAAGTTATTCATGGTGTTGAAAATCTTATAAAGCAGATGTCTCTACCTGTGAGTGAATTGATCAGTGCAATGTTGCAAGAGAACTTTACTATACCTCTCATTGATGTATTGCTTGCTGTTCCACCTAAAACCACTCTTTGCAAAACAGAGGAGTTAAAGCAGCTAGAGATTTTAGCCAGACATTTTTTCCAGAGAAaagTCATTGTAACATCAACAAGTTTTCTCggatatttaaatgaattgatATGGAATGTTGCAGATTGGAAAGACAATGAATCACATAACCAGACACTGGTAGCTCATTGTAGTGCAGCATTGAAAATTCTACATTTATGTAGCATTGACAAAGAATCTGTCAACAGTCTATTTTCTTGTGGTCTAGTTGATCCTCTTGTTGAATTAATTATGTCATTGATACCAAGATTAATAAATAAgattcaaaatacaaaaccaATTGAAGAAAAACCTGCTTTATTAAGTCAATTTGATGAAAGCGTAAAAGGCAGTATCaatgagcaaaaaaataacactaaCTTAGAAGTTGAGGAGGCAGAAAATCAAAGCTATATTTCTTCTGAAGAAGATACTTTTTCATTGCTGGAAGAAGTTACTTATTCAAATGATGACATTTTCTTACTTGGtaatgaaatagattttaaaaagcattcaGTGACATTCTGCTGcgaaaatcaacaaaaaagtttatctcgTTTGCGGGCTGATTCATATATCCTACGCAACCGAACCCTTTCAGTAGATCATTTACATCGTTCTGCTGCTTCAACAGAGCCATCAGttgtttttgatgaaacaGATGAGAATGAACAAACAGTACTCACTAGTCATGGGCGAACATTTTCCATTTCTGCAAGTCATCAACAGATGAGACGTATATCTAGAACACTTAGTGCATCTCTGCAACAAACAAAGTCTGCTGATTTTTTCTCTCAAACTAATGAACCTAATGAAGTTACGAAAGAGCTCACCAAGCAAACTCTCATGATTGTGTACcacatgataaaaaattgcagTGAAGAGATTAGCAAGCGAATTTGCTCTACACATATTTTGTCTCTACTCTACTGTATAGTTGGTTGTTTTAATGGAAACTTTCAAAAGTGTTTTGGGTTGACATTATCATCTTCAATTTTGCATTTGAGTAAAGTACTGGGAAGTGTTTCTGAACTATTAaATGATTCAAGTGTGTCAATGGAACACTCAGGCTCCCATCACACCAGCATTATCAGTTCTGATGGTCTTCAAATAACCAatgaaaattggttttttgaaACAGTTTGCGCAAATCAATATGTCAGTAGGTCATTATACTCAGAGGTTGCTCCACTTGGTTGGTATTATGAAGTAACTGTATTAACTGATGGAATAATGCAAATAGgATGGGCAACTGATAAAAGTATATTCAGTCCTGAGAAAGGCATAGGTGTTGGTGATAATACAGAGTCATGTGGTTTTGATGGTGCACGATGCAAAATTTGGGATGGACCTTCAATAGATTTACTTGTGCCTAATGATTATGGAATTGAGTGGCAACCAGGGGATGTGGTTAGTGTATTGTTATCATGGGATGGCACTGTTTCATTCTGGATGAATGGCAAAGATATGGGACCTGCATTGAAAAAGCTTGATGCAAACTGCAAATGGTTTCCAGCTATCTCTTTGTCAGCCGGCCAATATTGCACCTTTGCTTTTGCTGAGGAAGATTTTAGaTATTCAAAACCATCTGGCTTTCATTCTGTAGCTGAATTAAAATGCCaaactaaaaactattataaGCATCCTAAAGTTAATTTGTTATCTACTTATCAACCGTTGCCAGGCATTCATTTTGaaggTACAAGTCAATTGGTTTATTACTTTGAAGTGGAACTTTCAAGTTATATACTATTAAAGGACATCACTATTGGCTATTTAAATCCTGCTAATCAGCCACTTATTTCTTATACAAAGACTTTATCATATTATGGTGGAAACATATTTGGTTGTGGTATTCTTGTACCGAGCATGGAATTAATTGTCACTTGTAATggagaaattgtttttagggATCCAATTAGTTTTGGTTTCTCAGATGaatcttttctaaaacttttaccTTTTGTTTCAACAACAAAAGTAAAGTTGAATGTTGGGGACCGTTTGTTTACTTACAAAGAAGCAAACAAATCAATATATAAACAGGGCTTTGCTAATAGTGTTTATGATGTAATGACAGAACTAGAAAGGactGGAGACAGCAGTGATGAGTGCAGAACAATATgggaagaattttttttattgaagGttaatgtaatatattttgaagagAGATTGGATAATCTCAAACCAGAGCAATTAGTGGAATGCAAGggAAAAATCAATGagttgttttcaaaatgtgtGGACACATTGAAGGAAGATAACCAGATTAAAGTTGTCAATTCACTTCTGACGTTATGTACATTAATGAAGTgtgtgttcaaaaaaaaatttactgacTTTGGTTATGAtgtgataaatattttgattggttttgATCAAGCAGAGCAAATCACTCAGaaactttttgaaaCCTCCAGTATTTTTCTACTTGGAGATTACTCTGTAAGTTTGAAGAATCTAGTGTTGAAAATGTTGCTAATTATTGTAACGGCTGTCGATAATGTAAGCTCAAACACAATATTGGAGTATCTGATGATGTGCAATTTGTTTGATACATTAGCTCagATACTGTCCAATCCTGTGCTCCGTGAAAGTCATGGTTATGAATCTGTTATCATACTTTgtattttacttaattatcGAAAAAatgagTCAGTGAATCCTTACCTAATGAAGCTTTCACTATTAGATGATGAACTTGCACTAAATgGTCTTGGTTTAGTAATCTCAAACATACTTTCCACAAGTAACAGaaattattatCTTCTAAAGTCTAAAGAGCTGGTAGTTACCAGCAGTTTATTGAGTTCTTTGACAACctttGTGGGTAGTATGTTTGTTTCAAATGAAGATGAACTTCCTTGCGTAAGTTCAGAAAATGATGTTGTTTTGTTGGCTTTATATGAAGCTGTCCTTACCAATAGGAGTTTCTTTACTGTTCTCAGCCATGTAATGaCTCATGAAAAAGACAGGAAGTTTAAAGATGAGAGCCTTTTGATTGAAAGATCAGTTCCAGTTCCTGAGGATAAACTATCTGATGATCAATCACGTTCCATTGATGAAGAGCAGTCAAGGAACTTGATGGCCACTCTTTTGCGGTATTCCTCTATTGCTATACAGGAcacaaaaacGGAACATGGCAGCAATACAGCAAGATTGTGTCTAAGTATACTTTGTTGTATTACTGAGgaCCAATATGCTAATTCATTTCTACATGATGCAAATATGACTTTCTCTGTGCCTATTTATAAATTAaaCCTTTATCATAGAAAAGTGGGTCTAGAAGTGCCTTTACAAAGACCTTTAGCTTGTGTTTTGCTTGatCTAATGGTGGAATTTACTGTTACACATATGATGAAGCGCTTTCCTATCTTTTTGTACCAGAAGTGTGTGGGCATTATTCATCGTTGTCTGTGTTACCAAAAGAAATGTCGCATACGTCTGCAGTATTCCTGGAAAAATGTTTGGACATCTCTTATACATCTATTGAAATTTATCGTTTCCTCCGAATCGTTTCTTATTccaaaatatgatatttttgatcTCTGTATACAAGTTATAAACATCTTCAACTTATTTATAACATACGGCGATACTTTCCTTCCGACGCCGACAGCGTATGACGACCTTTACTATGAAATCATACGAGTTCACCAAATATTTGATAATCTATATACTATGGCCTTACGTTACGTTTCAAATGAAAGTGAACTCAAAGCACCTGCCAGCAAACTGACAAGTTGCTTGGTTAACGTAAGGGCAATTATTCATCACTTTTCTCCTAAGATTAACTCATGGTCACAAAAgcacaataaattttctttatcagaGGAAGAGGTATTGACAATCCTGAGAGAAAATTACGATACACTCACTCTAAAATTGATGGAAGGATTGGATAGCTACGTGAAGCGAATTGCTGCCaatgaaatttcattttttacacaaatgGTTCGAAGTATAACCAATCGGGTGCGTAATAAAATCAACATTTCAAACCTGGAACAAAGAAGTGTTTTACAGGAGTTCTCGTCTATTAAATAA

Transcript

BRAKERKRET00000007956

Protein

BRAKERKREP00000007956.1

MSSTTLPLAITTGVAALMGSIAAWKIKSLYASLENSKEKELTEIVHDLNIENIAGLLKSSDFKIRQSAEQLLLDRAARKWTLSYILKQCIVDDIKKVVKAVTAIHLLVKSSEYAKAKLIKLQATEILTKTIENISKNFDYTYLVQECKEKYLVEKVLNHCVASLFYLLLHTPSALAEFSKEKTFIKEILVNILGDHSFYISTEVRRWSTYILHQLVQQEVPIKSSLRQWGIIRKATRCIIVTAGDILQIQLCLQILVQYLNDSAEEMVQICKEMATLGILSHLVGLLRSDDDENVVQLSAILIHNFCCFDVDILYLAQIPGFVKILYSVLSSTDYGTQHTILRICNYLSVASSKFRKSLLDYKPLIKKLSVFMSSNNIEVMRGSLMLIHDLLMPDKSSIQKLVKLNPEIIKSLVKLSFTCKNDTVQLIAETLGYLCSCEPLHSLILEYGVVNSILHFAKSNDVGVQFWASALLLNISMISDQMKETIIQNGGISILLEMAVSVDEVDLPDIATNATKTLVILGYLESTIDVKLTCGLESSIIIDGKEHCPGKQGINLVSLDFINYKYSKGQVIQPSELEVYLTENMDTIKKSDSLFMVTQGDCTVLDSVDQPSIVYKKFMRNEDFSFLCSPAWCLILTSQHCEVIHGVENLIKQMSLPVSELISAMLQENFTIPLIDVLLAVPPKTTLCKTEELKQLEILARHFFQRKVIVTSTSFLGYLNELIWNVADWKDNESHNQTLVAHCSAALKILHLCSIDKESVNSLFSCGLVDPLVELIMSLIPRLINKIQNTKPIEEKPALLSQFDESVKGSINEQKNNTNLEVEEAENQSYISSEEDTFSLLEEVTYSNDDIFLLGNEIDFKKHSVTFCCENQQKSLSRLRADSYILRNRTLSVDHLHRSAASTEPSVVFDETDENEQTVLTSHGRTFSISASHQQMRRISRTLSASLQQTKSADFFSQTNEPNEVTKELTKQTLMIVYHMIKNCSEEISKRICSTHILSLLYCIVGCFNGNFQKCFGLTLSSSILHLSKVLGSVSELLNDSSVSMEHSGSHHTSIISSDGLQITNENWFFETVCANQYVSRSLYSEVAPLGWYYEVTVLTDGIMQIGWATDKSIFSPEKGIGVGDNTESCGFDGARCKIWDGPSIDLLVPNDYGIEWQPGDVVSVLLSWDGTVSFWMNGKDMGPALKKLDANCKWFPAISLSAGQYCTFAFAEEDFRYSKPSGFHSVAELKCQTKNYYKHPKVNLLSTYQPLPGIHFEGTSQLVYYFEVELSSYILLKDITIGYLNPANQPLISYTKTLSYYGGNIFGCGILVPSMELIVTCNGEIVFRDPISFGFSDESFLKLLPFVSTTKVKLNVGDRLFTYKEANKSIYKQGFANSVYDVMTELERTGDSSDECRTIWEEFFLLKVNVIYFEERLDNLKPEQLVECKGKINELFSKCVDTLKEDNQIKVVNSLLTLCTLMKCVFKKKFTDFGYDVINILIGFDQAEQITQKLFETSSIFLLGDYSVSLKNLVLKMLLIIVTAVDNVSSNTILEYLMMCNLFDTLAQILSNPVLRESHGYESVIILCILLNYRKNESVNPYLMKLSLLDDELALNGLGLVISNILSTSNRNYYLLKSKELVVTSSLLSSLTTFVGSMFVSNEDELPCVSSENDVVLLALYEAVLTNRSFFTVLSHVMTHEKDRKFKDESLLIERSVPVPEDKLSDDQSRSIDEEQSRNLMATLLRYSSIAIQDTKTEHGSNTARLCLSILCCITEDQYANSFLHDANMTFSVPIYKLNLYHRKVGLEVPLQRPLACVLLDLMVEFTVTHMMKRFPIFLYQKCVGIIHRCLCYQKKCRIRLQYSWKNVWTSLIHLLKFIVSSESFLIPKYDIFDLCIQVINIFNLFITYGDTFLPTPTAYDDLYYEIIRVHQIFDNLYTMALRYVSNESELKAPASKLTSCLVNVRAIIHHFSPKINSWSQKHNKFSLSEEEVLTILRENYDTLTLKLMEGLDSYVKRIAANEISFFTQMVRSITNRVRNKINISNLEQRSVLQEFSSIK

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DCT2	Armadillo-like helical domain-containing protein 3 OS=Xenopus laevis OX=8355 GN=armh3 PE=2 SV=2
Q6PGW3	Armadillo-like helical domain-containing protein 3 OS=Danio rerio OX=7955 GN=armh3 PE=2 SV=2
Q6PD19	Armadillo-like helical domain-containing protein 3 OS=Mus musculus OX=10090 GN=Armh3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005711 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08427 all species →	ARMH3_C	Armadillo-like helical domain-containing protein 3, C-terminal	Domain	Interproscan
PF00622 all species →	SPRY	SPRY domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR013636 all species →	Domain	Armadillo-like helical domain-containing protein 3, C-terminal	Interproscan
IPR043136 all species →	Homologous_superfamily	B30.2/SPRY domain superfamily	Interproscan
IPR001870 all species →	Domain	B30.2/SPRY domain	Interproscan
IPR039868 all species →	Family	Armadillo-like helical domain-containing protein 3-like	Interproscan
IPR000225 all species →	Repeat	Armadillo	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR003877 all species →	Domain	SPRY domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13608 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKREP00000007956.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.