Gene detail

Detailed information of BRAKERKREP00000008120.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: XP_012559064.1, cyclic AMP-dependent transcription factor ATF-3 isoform X2 [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P01102	p55-v-Fos-transforming protein OS=FBJ murine osteosarcoma virus OX=11805 GN=V-FOS PE=3 SV=1
Q2KII1	Cyclic AMP-dependent transcription factor ATF-3 OS=Bos taurus OX=9913 GN=ATF3 PE=2 SV=1
P18847	Cyclic AMP-dependent transcription factor ATF-3 OS=Homo sapiens OX=9606 GN=ATF3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000852 (this species only)
Transcription factor family	TF_bZIP · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00170 all species →	bZIP_1	bZIP transcription factor	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004827 all species →	Domain	Basic-leucine zipper domain	Interproscan
IPR000837 all species →	Family	AP-1 transcription factor	Interproscan
IPR046347 all species →	Homologous_superfamily	Basic-leucine zipper domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23351 all species →	FOS TRANSCRIPTION FACTOR-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKREP00000008120.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.