Gene detail

Detailed information of BRAKERKREP00000008856.1 in Hydra viridissima

Genomic Location: :...
NR annotation: XP_047124104.1, nucleolar complex protein 3 homolog isoform X2 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERKRET00000008856

ATGGCTAAAGCAAAAGCAAAGTCTACATCCAAGTTGAaacttaacaataaatttgcCAACAAGCAGATGAAATCCAGCAGATTAtacaagttaaataaaaaagtgggaacaaaaaagacaattaACATACCAAAACAGCAAATATTTGCCAAAAAAGTTGACAatgtttcaattaaaaacgATTTCTTTGATCCATATGATGAAGAATTAGAGTTTTCAGATGAAGAAATGGCAGAGTTTATCAATGAAAACTCGGCTCAATTATCTTTCTTGTCAACAAATTTGTCAAGTGATAAACAAGGAAGGcgaagaaaaaatgaagacaGTTCTGTGcctgattttgaaaaaaagcctCGATTATCAATTGCAAACATGTCACatgaaaataatacaaataaagttgATTTATTACCTTTTAAAGGAGATAAAGGAATAATTTTACGACAGATTGATAAAGTAAAGCCAGtgGAGGAAGTTTCTCTAGACTCAATGGTGCCTAAAGGATCTTCTGAAGAGGTCAAAGCATCTTCTGAAGAGGTCAAAGAACTCAGTGCAATAGAGTTAATGGCAAAACATCAAGCAGATATTAATAATGCAAAGATAGAGATAGCTGAAATCTCACAAAGTGTCATAGAAAATCCTGAGCAAAATATTAgcaagttaaaaactttaactaagTTCTGCAATCAAGATAATCCTACTGTGGTTCGAAAACTCTCTTTTCTGTCATTGCTTGAGGTGTTCAAAGATATCATTCCCAGttATCGCATTCGAGAATTaagtgaagaagaaaaagcagcaaagattagttgtgatgtaaaaaaagttcgtgattttgaagaaaattttatttcgatTTACAAGCTTTACTTGCAAACACTGGAAGATACATTAAAagaTTGCTTGAGAATGTTCAAAAAGAATAATCAAACATCTTTCAAGAAAAAGCAGTCAAAGTTTGTTGCTTTGTGTATAAAATGCTTTTGTGAACTTCTTGAGAATGCTTCACATTTCAACTTTCGAACTAATATCATTGCTATAATTGTACCTAAAATGGAGTTGTCTGGAGATCTTTCAGAAGCTGGaatgatttgtttaaatacaataaaaaatgtctttcgCAATGATTCAGTTGGTGACATTTCACTTGAAGTTGTAAAGTTCATTAACAAGCTCGTCAAATGTAAACCTAATGTAAAACCCCAGgttttagaaacttttctttgtttgcGTATTAATGCAGACGCACTTAAATTGGCAGCTTTGAAAGGCAACAAGATGGaaagattaaaacaaaagcacGAAGCAATGAAGAAAATGTCTCGAAAGGAGAAGAagagaaaaaaagttgaagataagTTAGACAAAGAATTACAAGAAACTGAAGCAGTAGAGAGccaagaaaaaatacaaaaggcGcaaacaGAACTTGtcaagtttgtttttgtaacaTATTTTCGAATACTGAAGAATGGGACCAATACAAATCTTCTGAGTGTTGTACTACAAGGCTTGTCAAAATTTGCTCACATCATTaatattgagttttttgaTGATCTGATGAATTGCTTAGgaaatttactattaaaagagAATTTAGGAACAAATGAACGTTTGAATTGTATTTcaactgcttttaaaatattatctggCCAAGggGAAGTTCTAGTGATTGATCCTCGTAACTTCTACACAGAGCTATATAATCTGTTACCTTTTATTGGGGCAGATAGCGATGAAAGAAATGTACAGTTAACGAGAGAGTGTCTAGACATgatgtttcttaaaagaagaaaacaaGTGTCGCTGCCACAAGTTCATGGTTTTTTTAAGCGCATTTCCACAATGCTGCTTCAGTTAAACGCAGACCAAATGTTTGATTATTTGATTCTAGTTCGAAATATGCTACAGTTACACACGAAGTGCGATTTTCTTTTGGATAACGAAGCATTTGGTAGTGGTTCATTCCAACCAGATATTTCTGATCCAGAACACAGCAATGCTGACAGTTCGTGTTTATGGGAATTAAACCTGGCACGTCTTCACTACCATCCAGATATTCGTGTTATTGCCAACCACATAATAAATGGAGCTCCTTCTCAAGGAGCCTGGTCTTTGCCGAATAAAATTCTGCAAAggctCAATTGCAAAAGTCAAACTGGTGGAGATGACTACTTTCCCGACTTTTTAACGCAAAAGAAAAGAGCTACCGTGAATCATTTGATAGAACACTCAGAAAGAATAAACTCTTCATTCAATCGAGTGATGGCTGCTGTTGAAAAGCAGATAATATCTTTCACACAAACTCACCTTTGA

Transcript

BRAKERKRET00000008856

Protein

Uniprot

Uniprot term	Description
Q8VI84	Nucleolar complex protein 3 homolog OS=Mus musculus OX=10090 GN=Noc3l PE=2 SV=2
Q6DRN3	Nucleolar complex protein 3 homolog OS=Danio rerio OX=7955 GN=noc3l PE=2 SV=1
Q5XGZ8	Nucleolar complex protein 3 homolog OS=Xenopus laevis OX=8355 GN=noc3l PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03914	CBF	CBF/Mak21 family	Repeat	Interproscan
PF07540	NOC3p	Nucleolar complex-associated protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016903	Family	Nucleolar complex-associated protein 3	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR005612	Domain	CCAAT-binding factor	Interproscan
IPR011501	Domain	Nucleolar complex-associated protein 3, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14428	NUCLEOLAR COMPLEX PROTEIN 3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0006270	Biological Process	DNA replication initiation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14834	NOC3; nucleolar complex protein 3	-	Ribosome biogenesis	ko03009	deepkoala