Gene detail

Detailed information of BRAKERKREP00000010053.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: NP_001296669.1, protein maelstrom homolog [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006787 (this species only)
Transcription factor family	HMG · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09011 all species →	HMG_box_2	HMG-box domain	Domain	Interproscan
PF13017 all species →	Maelstrom	piRNA pathway germ-plasm component	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009071 all species →	Domain	High mobility group box domain	Interproscan
IPR036910 all species →	Homologous_superfamily	High mobility group box domain superfamily	Interproscan
IPR039259 all species →	Family	Protein maelstrom	Interproscan
IPR024970 all species →	Domain	Maelstrom domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21358 all species →	PROTEIN MAELSTROM HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0007140 all species →	Biological Process	male meiotic nuclear division	Interproscan
GO:0007283 all species →	Biological Process	spermatogenesis	Interproscan
GO:0034587 all species →	Biological Process	piRNA processing	Interproscan
GO:0043186 all species →	Cellular Component	P granule	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0045892 all species →	Biological Process	negative regulation of DNA-templated transcription	Interproscan
GO:0060964 all species →	Biological Process	regulation of miRNA-mediated gene silencing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18411	MAEL; protein maelstrom	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000010053.1 across 29 RNA-seq samples of Hydra viridissima. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

22TPM > 0

7Conditions

1,075.7Max TPM

452.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole body	18	12	408.29	1,075.66
Whole	6	6	648.14	690.28
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	1	525.29	525.29
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	1	468.34	468.34
symbioic hydra M9 strain · symbioic hydra rep1	1	1	436.21	436.21
symbioic hydra M9 strain · symbioic hydra rep2	1	1	466.41	466.41
unannotated	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977	1,075.66
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977	948.19
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977	835.55
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977	691.89
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977	669.49
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977	658.05
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977	614.63
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977	545.17
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977	353.93
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977	328.01
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977	316.72
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977	311.87
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397	690.28
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397	679.97
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397	655.10
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397	638.40
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397	630.07
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397	595.04
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902	525.29
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902	468.34
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902	436.21
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902	466.41
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636	0.00

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.