Gene detail

Detailed information of BRAKERKREP00000010099.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: XP_002162294.2, hypoxia up-regulated protein 1 [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

BRAKERKRET00000010099

ATGATACTAACAAGTGGTgcattaaaatacatttggTTATTTGTTTGGTTTTCATGCTTTTATAAAGCAGcttctaTTGCTGTCATGTCAGTGGATTTAGGAAGTGAATGGCTTAAAATAGCTATTGTAAAGccTGGTGTTCCCATGGAAATGGctttaaataaAGAATCCAGGCGAAAAACACCATttgttatttcaataaaagatgGTGAAAGATTATTTAGTGATCCTGCAGTTGCAGCATCTATAAGGCATCCACAGAATGCTTATATTTACCTTATGCATATTCTTGGGAAAAAGTTTGATAGTTTAGCAGTTCAGACgtataaaaaaagGTTTccatattacaaaatatataaagatgaaattagaggaacTGTTTTATTCAAGGGAGATGAtGATCAGCTGCATTCAGTAGAGGAACTTTTTGCAATGATACTTAATTCAACAAGACAAATTGCAGAGAACTTTGCAGatcaccCAATGAAAGATTGTGTTTTAACAGTTCCAGTCTTCTTCACTCAAGCTGAGCGAAAAGCTCTTTTAGATGCATCAAATATGACAGGGCTAAATATTTTGCAGTTGATGAATGACAATACAGCAGTTGCACTAAATTATGGAATATTTCGAGCTTCGTCTTTTAATGAAACTGAGAAGcaTGTGATGTTTTTTGATATGGGTGCTTCTCATGCAACTGCCACCATAGTAGGGTATAGTACAACAAAAGTGAAAGATCGAGGTTATGTTGAAACTGTACCACAACTTGTTGTTAAAGGTATCGGattTGATACTTCATTGGGAGGTTTAGAAATGGATTTCAGAGTACGAGACTACTTGGTAGAAGCATTTAAAGAACaacataaacttaaaaatgatatcaCAGAAAACCCAAGAGCCATGATAAAACTTCTCAATGAAGCAAGGCGTGTCCGTCAAGTTCTAAGTGCAAATGCTGATCATATGGCACAAGTTGAGAacttatttgaagaaaaagattttcgtGTAAAACTGACCAGAGACAAATTGGAGGAACTTTGTAAAGATATGATAGACTCTATTCAGAACCCAATAAAAATGGCTTTGGATGCCTCTTCAATTAAAATGGAAGAAATAGAAGCAGTTGTATTGATGGGAGGTGGTACTAGAATTCCAAAAGTACAAGAAAAACTCCTGGAAATCACAAAATTgCAAGATTTGGCTAAGAATATCAACACAGATGAGGCTGCTGCTCTTGgATCTGTTTACAAAGCAGCTGATCTATCTGCTGGTTTTAAAGTGAAACGATTTTTAGTAAAAGACCTTAATCTTTTCCCTTAtgatGTTCAATTCTTTCGATCTGGAGATAACGATGAAACACCTCGTTCCATTACAAGAAATCTATACAACCGACTAAATCCATTTCCTCAGAAGAAAGTAAtgacttttaacaaaaaacctagtgattttaagtttaatattaCATATGGTGATCATTCATTTCTTTCTGACAAActtaaaagttcacTTGACCTTGGAGAAGTCCTGCATGTAACATTAACTGGTGTTGAAAATGCGCATAAGAAAAACGCCAAAGCAAATGCCAAAGGtgttaaagcattttttcatCTTGATGAGAGTGGAATATTAAGTGTGGAAAAGgTTGAGGCTCATTTTGAGAAGACACCAGAGCTTATTGCTGAAGAAGAGCAATCAACATTTGCCAaattggGTTCTAAATTGTCCAGTTTTTTTGGATCTTCAAAAACAGaagatgaaaaagttgaaagtgtaaaagaagaacttaaagatgaaaagaaagaaagaaaagagaccaaaacttcagaaaatttaaaaaatgaacctgaaaaagaggaaaaagaaaaagatggaaaagaaaaagatggaAAAGAAAGCAATGAAAAGAAATCAGAAACAAATGATAACATCAAGCCTCCAGATTCCAACAATTCTACAATCCTTAATGCAACCAGCtctaaaAATGAAACAGCAGAAAATACTACTGCAGAAGCAAAGCCTGCAGAACCAGTGATAGTGAAAGAACCTATTGTGTTAGCCTATGAGCGTGCTGATGTTCCTGTAATTCCCAATGATGTTTATGAGACTTCTGTCAATAAaataAAAGACTATGAAGCTCGTGATACGGCCAAGAAAGCTCGTGAGCAAGCCCAGAATATACTAGAAGATTACATATACACATTCAAAGATAAGCTCTCTAGAGAAGATATTATTCCTCTTGCCACAGAGGAAGAACGATCAAGTATTGAAGAGGCTTTTAATGTTGCAGGAACTTGGCTGGAAGAGGAAGGCTTTGAGGCTGATGAAAAGacttttaaaaagaagtttagcgaactaaaaaaagttgctgaaGAGTTGCAATTTCGTTTGGATGAGCAGATAGAACGCCCCAAAGCAATAGCTGCCATGCTGCAAAGTTTGAATATCACTGAAATGATGCAAAAAACTATTAGTGAAATGCCTGATTCTAAAGAAATATACACTGATAAAGActtcaaagattttgaaaaaataagtgaTGAGACTAAGCAATGGTTCACGGAAACGTGGAAAAAACAGAACGGAAGTGATCCAACAAAGAAACCTATTCTTCTTAGCaaagatatatattattatcaagCGAAACTTGACCGTGAACTGATGTACTTAATTAACAAAGCGAAACATTTTGTCCCGAAACCAAAACCAAAGTCAGCTTCAAATACGACAAAATCAACCGAGAAAACTGCCACTAATAACTCTACTAAACAAAGCGAATCAGAACCAAAACCACCCAAACCTAACGAATCTGGAGAGCCTAccaaaaaaggcaaaaaaaataaaaaagtacctGCTGAGGATGAACCAGTGCTTGAGTtaggaaatgaaaaaactgattCAAGTAGTTCTGAAACGAAACCTGATGACGATAGTAAATCTGCTGACGAATCTCAAGAAACAGGTGGCAATAAAAATACACATAACCCTGAAGATGAGCTCTAG

Transcript

BRAKERKRET00000010099

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7ZUW2	Hypoxia up-regulated protein 1 OS=Danio rerio OX=7955 GN=hyou1 PE=2 SV=1
Q5ZLK7	Hypoxia up-regulated protein 1 OS=Gallus gallus OX=9031 GN=HYOU1 PE=2 SV=1
Q9Y4L1	Hypoxia up-regulated protein 1 OS=Homo sapiens OX=9606 GN=HYOU1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005757 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00012 all species →	HSP70	Hsp70 protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029048 all species →	Homologous_superfamily	Heat shock protein 70kD, C-terminal domain superfamily	Interproscan
IPR043129 all species →	Homologous_superfamily	ATPase, nucleotide binding domain	Interproscan
IPR029047 all species →	Homologous_superfamily	Heat shock protein 70kD, peptide-binding domain superfamily	Interproscan
IPR013126 all species →	Family	Heat shock protein 70 family	Interproscan
IPR050451 all species →	Family	Heat Shock Protein 70 (HSP70)	Interproscan
IPR018181 all species →	Conserved_site	Heat shock protein 70, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45639 all species →	HSC70CB, ISOFORM G-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0140662 all species →	Molecular Function	ATP-dependent protein folding chaperone	Interproscan
GO:0030968 all species →	Biological Process	endoplasmic reticulum unfolded protein response	Interproscan
GO:0034663 all species →	Cellular Component	endoplasmic reticulum chaperone complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09486	HYOU1; hypoxia up-regulated 1	-	Chaperones and folding catalysts	ko03110	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000010099.1 across 29 RNA-seq samples of Hydra viridissima. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

10TPM > 0

7Conditions

24.2Max TPM

5.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole body	18	2	2.55	24.22
Whole	6	5	9.27	12.62
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	1	16.90	16.90
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	1	14.03	14.03
symbioic hydra M9 strain · symbioic hydra rep1	1	1	11.51	11.51
symbioic hydra M9 strain · symbioic hydra rep2	1	0	0.00	0.00
unannotated	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977	24.22
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977	21.66
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397	12.62
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397	12.50
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397	10.88
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397	10.57
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397	9.05
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397	0.00
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902	16.90
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902	14.03
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902	11.51
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902	0.00
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636	0.00

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.