Gene detail

Detailed information of BRAKERKREP00000010619.1 in Hydra viridissima

Genomic Location: QPEY01000048.1:147621...152790
NR annotation: XP_047127442.1, protein misato homolog 1 [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2YDW2	Protein misato homolog 1 OS=Mus musculus OX=10090 GN=Msto1 PE=1 SV=1
Q5RF82	Protein misato homolog 1 OS=Pongo pygmaeus OX=9600 GN=MSTO1 PE=2 SV=1
Q9BUK6	Protein misato homolog 1 OS=Homo sapiens OX=9606 GN=MSTO1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007960 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10644 all species →	Misat_Tub_SegII	Misato Segment II tubulin-like domain	Domain	Interproscan
PF14881 all species →	Tubulin_3	Tubulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036525 all species →	Homologous_superfamily	Tubulin/FtsZ, GTPase domain superfamily	Interproscan
IPR049942 all species →	Family	DML1/Misato	Interproscan
IPR019605 all species →	Domain	Misato Segment II tubulin-like domain	Interproscan
IPR029209 all species →	Domain	DML1/Misato, tubulin domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13391 all species →	MITOCHONDRIAL DISTRIBUTION REGULATOR MISATO	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0007005 all species →	Biological Process	mitochondrion organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K27320	MSTO1, MST; protein misato	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000010619.1 across 29 RNA-seq samples of Hydra viridissima. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

24TPM > 0

7Conditions

70.5Max TPM

23.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole body	18	13	15.74	61.76
Whole	6	6	49.63	70.53
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	1	36.63	36.63
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	1	34.20	34.20
symbioic hydra M9 strain · symbioic hydra rep1	1	1	16.50	16.50
symbioic hydra M9 strain · symbioic hydra rep2	1	1	2.71	2.71
unannotated	1	1	22.33	22.33

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977	61.76
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977	35.45
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977	35.45
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977	32.29
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977	28.03
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977	26.11
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977	20.69
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977	13.43
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977	9.33
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977	8.92
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977	5.93
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977	4.04
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977	1.90
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397	70.53
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397	63.39
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397	60.33
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397	52.49
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397	49.25
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397	1.78
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902	36.63
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902	34.20
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902	16.50
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902	2.71
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636	22.33

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.