Gene detail

Detailed information of BRAKERKREP00000011547.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: CAH3170552.1, unnamed protein product [Porites lobata]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

BRAKERKRET00000011547

ATGATAAGCAACGATGATGGCTCCGATCCTATagtaacagaaaaacaaattaaacaaaataatcatgatcttaatgaaatattttcaagatatAACATCACATGGAGACTAAAAATTCACGAAGTAAGAAATTCAACGTTGAGAAAGAAAACTGTTGTTCTTTCTTGTTATGGACAATGTCCAAACGAttgtaaaagtgaaaaaaaactactcGAATGTGAGAAACCTTGCGACGACAAGAGTATTGCAAATAATGTCTGCAACCCAGAATGCAACAAACAGTTTGGTTCAAacgattttgataaaaaatcaacCAAGGATTGGGACGGAGGTGATTGTTGCAACGCCTCTATTACGGATGTAACAAAAACATGCTACGATCCGGAATCCCACAATCGCGCTTTCATTAAAGAAACAGAGCTTAAATCTTTTGTTAATCTTGAcaataaattctatttaaacCTGTTCCCACTgaagattaaaaatgaaatgttagGTAAATCAACTTTTCCCTGGGTACCAGAGGCCTTGGGTATACAAGGTGGTACAATAGTTAGTTCTAAGCGGTTTGGTCGTCCACATAATAGTAATATAAACGACATTGTACATGAATTAGGACATAACCTCGGTTTATGGCATGTTCACAAGGGAGTAAGTGAAATATATACTTGTGACGATAAATGCGCAGAGAAAAAACCATCAATGATAAATGGAGATCTATGTGACGACACTAATCCAACGCCGATAAACTTGAGTTGTGAAGACGAAGTATACGATAAAAAATGCTCATTATTCCGTTATAAGAATACaccatacaaaaattatatggGCTACTCATCAGgaTCTTGTGCAAATGAGTTCACAATCCAACAGCAAGCAAGAATGCATTGTTATATTGATCGAAACTATCAACTGTTACAAGAACATGATGGTGTAAGTCCTTCTACTTTACCTCTTGCACCCAGGATTCTTTCTAGCGACAATGGAAAGctGGTCATTACATGGATAGCCCCAATTGGTTTTGgtaaaaagtatatgaaaCATGAGTGTAGTATGTGCACACCAGATTCCTACAGTTTAAAGCAATTTGCAAGTCAGGCTTTTTCCCCACAGTattctaaaaatgattatgGGAAATTTACAGCAAACCAAGCTACAGGGCCTCCAGATGTGATAGGTTTATGTCATGCAGATGCCCATGCATGGCTACCAACAGTTGATTGTAAAATGGTAGATTGTTATTTGgatgtttattttgataataaagttatacCTTCTTCAATAAAGATCTGGATTACATTTCGCtcaaaaaattctattaaagACATAGAGCTGTTTCACCCTGATAATTCCTCCACATTGTTAGGTCCTGGTACAGCTCATTGTGACATCccttatacaaaatatataaattgtcACAAAATTGTATTATTTGTCAGGATACATGTTGCAGACCACCAGCCAGCTATTGATGCTGTACAGCTTATCTCAAAAATAAACCAGcatcattgtaaaaaatgtgaaagGTTAGCTTTAAAGTATTATGTATATAGACAGCcaccttttaaaaatggtgCTTACCATGAAGTCAAGGAATTGAGGTTTAAAGATGAAATTCAGAATGATGTTGAATATAAGTATCAAATACAGTCAGTATCAGGAAAACATAAAAGTCATCTTTCACCTAGTTTGACGTTTAACTCTAATTATGGTTTCTGTGGAGATGGTGTTATAGATAAGGAGGTTGGAGAAGAATGTGATGATGGTAATCTTCGGAATAATGATGGGTGTAACACTCAATGTAAAATAGAGTCAGCATTTAATTGTAAGCTTCAACCAAGTCTGTGTTATGTTTACAAAAGTGATGGAATTTgtgaagattttgaaaaaaaccaaacttcTTATGATTGTGGTTACTTTACGCCTAAAGGTTTTATAGATCAATGGGCAGACAATGTTATTGGTAAGCCAGGACAATCTAATGATGCATGTTCAGAAAATGTGATATCAGGGAAACCACCTATAGAAttaaaatgtgTGCCATATATTGAAGAAATCAATTCACTTTTGGCTTGGcgttcatgtaaaaaaaaccctaAGTACACTTATTTATGGGTTGAGGCCAGCTATAAAAGAGAAGTTGTAGCATCAGCTGTTGTGGTTTACTTTGCTTCTGATGGCTCTGGATTAGTGGGTGGAAAAAAAGCAAGCATAGTTATAGAGCTGAAAGACAATAAAGGAGAATATCATAGCATTACAGGAAAAAAATCTGTGGATATAAGTTGTAGAAATAATCCATTAGTTGTCcatatcataaaaaacatGACTGCAGTGGACTTTAAAACAGTTGCTGTACGAATCCAGTTCAGTGCTGTTTATTCAAATCTAGCAATCTCAGCAATAGCCCTTCGATCAAAGGATACAGAATTATATTATGGATGTGAAAACAACCAGGTTTATGATCCACATGCAAAGATGTGTCAGAAAGTACAATTAGAAGCCTATTTTTGCAGACCATTTCATATGGATCATGCAAATGCATCATGCTCTGGTAATAGTGAGGGAGATAAGTGTCAGATTAATTGTCACAATGGGTATAGTCCACAAGTAACTTTTGTATCTACCTGTAAAGCAGGGAAATGGACAATACCATATTTTTGTGAGCCTATTGTTTGTGAAACTCCACAAATCAAGCATGCAATTCTATGTAATTTCTTGTTTGGAAACAACACCCAAATCACCTGTCAAACAGATAGAACTTGGACCAAACCACAAGCATTCTGTTTCTCCACTTGTTCTCGATCAGTTCAAGTAGAAAATGCTATACCATATTTATCTGATGAATCAGGAAACAATTGCAATGTTTCTGGTGAAAACCACCATATAGAGATGGGAACACGATGCAGatttcaatGCAGGCCAGGTCACAGACCCTTGCGTCATATTCCTGGAAGTGTAATTGGAGGTAACACAGTAAATACAGTATGTGGTGAAGACAGGCAATGGATTCAAGATGGAaattttaCTATTTCTACCAAGTGTATGGAAAATGGTGAGTGGTCAGAAACATTTTCTGTTTGTAGAAACTCTGGATTCTGTGAAGCTTTTGAGAATAGTTCAGTTATCAATACAAGTCTTTGTAAGAACTTTCAAGTTGGTTCTGTTTGCAGGCCAATCTGTTTTGCTGAAGTTAATTCAGTCCTGGATATTATTTTCAAGGACAGTAGCAATTTTTCAATAGATGTAGCGCTGTACTGTATGCCAAACAAAAGATGGTTGCCTCCATTACATTCGTTTGAATGTGTTCAGCCGTGTATGCATCAATTCATTAAAGACGGTTTCTGTGATTGCCTTTATAACACAAAACATTGCGGTTATGATGGGGGAGATTGCTGTAAGAAAACCTTAAAAGCAAAAGTGAATTACTTGTTTGCAAGCTCCCCAAAATGTGACTGTGTTGACCCTgttgctttaaaaatgctcCAAGACGAACGAATTACTGGAAAAGGCTCAGAACAGTCTGTTGTTGACTATTCTGACGAAGTTGAAGAAATTGACGAGGAAGATGAAGACGAGGAAGACTTATGA

Transcript

BRAKERKRET00000011547

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q13219	Pappalysin-1 OS=Homo sapiens OX=9606 GN=PAPPA PE=1 SV=3
Q8R4K8	Pappalysin-1 OS=Mus musculus OX=10090 GN=Pappa PE=2 SV=2
Q9BXP8	Pappalysin-2 OS=Homo sapiens OX=9606 GN=PAPPA2 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003832 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05572 all species →	Peptidase_M43	Pregnancy-associated plasma protein-A	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008754 all species →	Domain	Peptidase M43, pregnancy-associated plasma-A	Interproscan
IPR024079 all species →	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR043543 all species →	Family	Pappalysin-1/2	Interproscan
IPR000800 all species →	Domain	Notch domain	Interproscan
IPR011936 all species →	Repeat	Myxococcus cysteine-rich repeat	Interproscan
IPR000436 all species →	Domain	Sushi/SCR/CCP domain	Interproscan
IPR035976 all species →	Homologous_superfamily	Sushi/SCR/CCP superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46130 all species →	LAMGL DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0007166 all species →	Biological Process	cell surface receptor signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKREP00000011547.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.