Gene detail

Detailed information of BRAKERKREP00000012071.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: XP_047134688.1, calcium-transporting ATPase type 2C member 1 [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

BRAKERKRET00000012071

ATGATCTTATTGTTACTAGCTAGTGGATTGGTCAGTATATGTATGGGGCAGTACGATGATGCTGTTAGTATAACTGTgGCAATTGTGATTGTTGTTACTGTGGCATTTATTCAGGAATATCGTTCAGATAAATCTGTAGAAGCAATCACTCAACTTGTTCCACCTTCATGCCATTGccTAAGAGATGGTGATTGgacaaattttttagcaaaggAGTTAGTACCAGGTGATATTGTTGCCATAGAAACAGGTGATCGTGTTCCTGCTGATCTACGGTTGTTTGAGGCAATTCAATTGGAAATTGATGAATCAAGCTTCACAGGGGAAATTGAGCCTGCTCGAAAGTGCACATTAACTTTGAGTACAAATAACGAAAAATCAAACATGGCTCTTATGGGAACATTGGTAAGAGCAGGAAAAGGGAAGggTATTGTATGTGGCACTGGTACAAATTCTGAGTTTGGATCAGTCTTTCAAATGATGAAGGATGAAGAGccgCCTAAAACTCCCCTTCAGAAAAGTATGGATCATCTTGGAAAGCagctttctttttattcaattctaATAATTgGCCTTGTTGTGTTGCTGGGTTGGAttcaaaaacgaaaaataatGGAAATGTTTACTATTGGTGTAAGcCTTGCAGTTGCTGCTATACCAGAAGGCTTGCCTATTGTTGTAACTGTGACTTTAGCTCTTGGTGTAATGCGAATGGCCAACAGGAATGCTATTGTTAAGAAATTGCCAGCTGTTGAAACGTTGGgctGTACAACAGTTGTATGCTCTGACAAAACAGGTACTCTTACAAAGAATGAGATGACAGTAACAGATATTGTTCTTGCAGATAGTCGAAGAGTTAAGATAACTGGAATTGGGTATTCAAGCCATGGAGAAATCCTTATTGATAACCATGCAGCTAGTGAATTTACAGATGATTCTCTGACTCACCTTGTTAAGGCAGGTTGTTTGTGCAACAATGcatcaattaaaaatggtGTGCTATTTGGACAAGCCACTGAAGGTGCAATAATTGCAGTTGGATtgaagCTCGGACTGGTTAGGCTAAATGATGAATACAAAAGACTGGAAGAAATACCATTCACTTCTGAAACTAAATGGATGGCCGTAAAAtgctgtaaaatattttctggaAACTACGAGgaGGCTAcaatgttttatgtaaaagggacttttgaaaaagtactTGAGAGATGCTCTACATGGATGGATAATGGAGTGAAGAAATTGTTAACTTCAGCTTATAAAGAAAGTGCAGCTGTTGAAGCATCAAAGTTGGGCTACCAAGGATTAAGAGTGGTGGCAATTGCTCATGGAGAAGAGCTAAACTCATTGACATACCTTGGCATAGTTGGTATTATTGATCCTCCTCGTGAAGGAGTAAGAAATGCAGTCTGTACACTCATTGAAGGTGGggtaaatgtaaaaatgctAACAGGTGATGCAAGAGAGACTGCTGTTGCAATTGCTGGAAAAGTTGGCTTGAATATAGAGgcaacaaatattatttcagGTGAACAAATAGACTCCATGGACTGCTATGAGCTGGATAAAGTCATTAAtaatATAACTGTGTTCTACAGAGTCAGTCCAAAGAATAAAGTCACAATAGTTCGTGCTCTTCAAAGAAAAGATCATGTTGTTGCAATGACAGGAGATGGTGTAAATGACGCTATTGCACTAAAGTGTGCTGACATTGGAATCACAATGGGAAAATGCGGAACAGATGTTAGTAAAGAAGCTGCAGATATGATTTTAGCTGATGAcgattttaaaactataatggTAGCACTTGCTGAAGGAAAAGGAATCTATTATAACATACGAAATTTTGTACGGTTTCAACTTAGCACGAGTATAGCTGCTATCACATTAATTACAATTTCTACATTAATGCAACTTCCCAATCCCCTTAATGCGATGCAAATCCTGTGGATAAATATCATAATGGACGGTCCTCCAGCACAAAGtttgGGGGTAGAACCAGTAACTGATGATGTAATGCGGCGAAAGCCACGTGCAGTTAAAGACCCTATGGTGAACAGATATCTGCTTATGCAGGTTCTAATCTCatcaataattattgtaacCGGTACTTTGTTCATATTTTGGAAAGAGATGTCTGATAATATTACGACTCCACGTGATACGACTATGACATTCACttgctttgtattttttgatatgttcAATGCGATGAGTTGTCGATCCCAGaccAAGTCAATAATAGAGATCGGTTTCTTTAGCAAcagaatgtttttatatgcGGTTGGTGGTTCTATTATTGGTCAAATGCTGGTCGTTTATTTTCCCCCTCTCCAGAGAGTGTTCCAAACCGAAAGTTTAACGTTTTACGATATTTTAACGTTAATTGCAATAGCGTCATCTGTGTTAGTTGTGGATGAAATAAgaaagttagttttaaaactttgcatgaaaaagttatggcgaaaaagaaatgtttgtgACTTGGTGTAG

Transcript

BRAKERKRET00000012071

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P98194	Calcium-transporting ATPase type 2C member 1 OS=Homo sapiens OX=9606 GN=ATP2C1 PE=1 SV=3
P57709	Calcium-transporting ATPase type 2C member 1 OS=Bos taurus OX=9913 GN=ATP2C1 PE=2 SV=1
Q80XR2	Calcium-transporting ATPase type 2C member 1 OS=Mus musculus OX=10090 GN=Atp2c1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001630 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00689 all species →	Cation_ATPase_C	Cation transporting ATPase, C-terminus	Family	Interproscan
PF00702 all species →	Hydrolase	haloacid dehalogenase-like hydrolase	Domain	Interproscan
PF00122 all species →	E1-E2_ATPase	E1-E2 ATPase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001757 all species →	Family	P-type ATPase	Interproscan
IPR023214 all species →	Homologous_superfamily	HAD superfamily	Interproscan
IPR006068 all species →	Domain	Cation-transporting P-type ATPase, C-terminal	Interproscan
IPR023298 all species →	Homologous_superfamily	P-type ATPase, transmembrane domain superfamily	Interproscan
IPR044492 all species →	Domain	P-type ATPase, haloacid dehalogenase domain	Interproscan
IPR023299 all species →	Homologous_superfamily	P-type ATPase, cytoplasmic domain N	Interproscan
IPR008250 all species →	Homologous_superfamily	P-type ATPase, A domain superfamily	Interproscan
IPR036412 all species →	Homologous_superfamily	HAD-like superfamily	Interproscan
IPR006413 all species →	Family	P-type ATPase, subfamily IIA, PMR1-type	Interproscan
IPR018303 all species →	PTM	P-type ATPase, phosphorylation site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42861 all species →	CALCIUM-TRANSPORTING ATPASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005215 all species →	Molecular Function	transporter activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0000139 all species →	Cellular Component	Golgi membrane	Interproscan
GO:0005388 all species →	Molecular Function	P-type calcium transporter activity	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006828 all species →	Biological Process	manganese ion transport	Interproscan
GO:0006874 all species →	Biological Process	intracellular calcium ion homeostasis	Interproscan
GO:0015662 all species →	Molecular Function	P-type ion transporter activity	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0034220 all species →	Biological Process	monoatomic ion transmembrane transport	Interproscan
GO:0070588 all species →	Biological Process	calcium ion transmembrane transport	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0006816 all species →	Biological Process	calcium ion transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01537	ATP2C; P-type Ca2+ transporter type 2C	EC:7.2.2.10	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000012071.1 across 29 RNA-seq samples of Hydra viridissima. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

0TPM > 0

7Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole body	18	0	0.00	0.00
Whole	6	0	0.00	0.00
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	0	0.00	0.00
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	0	0.00	0.00
symbioic hydra M9 strain · symbioic hydra rep1	1	0	0.00	0.00
symbioic hydra M9 strain · symbioic hydra rep2	1	0	0.00	0.00
unannotated	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.