Gene detail

Detailed information of BRAKERKREP00000012161.1 in Hydra viridissima

Genomic Location: QPEY01000060.1:838482...850083
NR annotation: XP_047125522.1, uncharacterized protein LOC100202074 [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERKRET00000012161

atgtcacAATGGAGAGGTTCTTATCCAAATAATGATAGAAATATGTTTTATCAGCATCAACGAGGAAGTAGTGGGTTTGGAATCGCCCCTTTAATGAGACCAGTTGGCAGAGGAAATTTTTATGGAGGATCTAATAATTGGAATCCTCAAGGATCTCGGGCTCAATTAAGTAGTGTTAGACCTCAAACAGTAAATAGAGGTGGCTACAGAACACCTGGAAGAGGTGAAGTAATTCGAATGGGACCTTCTAAACCAATACCATCCAAGACTACTCCTTCAACTGAGATGAAACTTGATGATGTTAAAAGTACCACTACAGTTACtgagattaaaaaagaagaaagtatTGTTAATTTAGTTGACGACCCTTTGATTTccaaaatatcagaaaaaagtCAGGAAACTGAGAAAACTGAAGATAAGAAATGTGAGGTGTTGGTTAAGCCTGTGGAAGAAGTAAAACCAAtagctgaaattaaaaaagaaaatccttGCATTACACTAGACCCATACAATAGTGAACTTCACATTCATATTGAAGAAAATGGTTTTGTTGGTTCAATAATGCGAGGAGAAGGTTTCGAATATATGTGGGGAGGTGTTCGTGCAACCCATGGTGTTATTAAGGGCAAGGTCTGCTTTGAGGTGCACATCCTAGAAGAACTTAAGGTCAATATTACAGATGAAAATGACTTGTATATTGTTCGTGTCGGCTGGAGTATTGATGGATCTGACTACCAACTTGGTGAAGATAAGTTTTCATGGGGGTATGGTGGGACTGCGAAATCTTCTAACGAAAACAAGTTTCGCGATTATGGAAAACGCTTTGGAGTTGGTGACACAGTAACTTGCTACATTGATTTAGATGCCACTCCAAAAGCCATATTTTACATGGTTAATGGTGAATACCTTGGGGTTGCATTTCGATTTACAAATGAACTTACTAAATCTCAAGCTTTGTTTCCACACATTGCCTGCAAGAATATGAAGTTCCGTGTAAATTTTGGTGCACAACTTCCTAAGTTCCCATTAACAAATGGTTTTCTTATGATTCAAAATGCAGCTGAGTTGATAAGTCCTCCTCCAGGCCCAACCAAGCCAGAAGAAGCAGAGATAATTATGATGGTTGGACTTCCTGGAAGTGGTAAATCTTTCTGGTGTGAAAAGTATGCTAGTGATCATAAAGATAAGAAATACTATATACTGggaacaaattttataattgatagAATGAAAGTATcaagtttaagtaaaaaacgAAATTATCATGGTCGTTGGGAAGAGCTGATTAAGAGAGCATCtgctgttttaaataaattatttgatgtaGCAAAAACAAGACCAAAGAACTATATACTTGATCAAACTAATGTCTATTTTACAGCAAGGCGCAGAAAGATGGAATCATTTCGTGGCTACAAACGCATTGCAGCTGTCCTTGTTAACAAACCTCTAGTTCTTGCAGACCGAATtgagaagcaaaaaaaaatagaaggaaAGTTCATACCTGATGAAGCTGttattgaaatgaaaagaaacttTACACTCCCTGAAGTGGGTCCTTCATTTGATGAAGTTTGGTATATTGAGGAGACCATGCCAATGGCTAGAGAGTTAGTGGAAAACTATCGTAAAGAGGGTGAAAATCTAAAGCATTCTGGAGTCAAACGATCCTTTCCTGATTCAGATGATAGTGGAATTAGTGATGACAAGAAGCCACGTCCTGAAAACCAGCAACAATCTTCATTGACGGCCACTCCTGAGCTTTCCACCTATAATAGAATGGCTCCAGTTAATACTGGTCCCAATATCTTAGGTCAACACATCAAAGATCCTCAACATTCCATGTCTAATCGGAATGTTAACAGCAGAGGATTTCAAAATGACAGAGTTGCTCATAAATCTTCACCAATGGAGGTGGAGCACTCTAGATTATCACCTAGAAGAGAGACCAGAGGTCGTTcaacaagtttgaaaagatCAGAGAGACAATTAGACTCATCACGTGAAAGAATCAATAGTAGAGATCGTGGTAGAGAAATTAGAGATGATCATAATGAAAGAGAGATTTTGAGAAGAGATGATCGAAAAGATCTCTCTTACAGAGATGAGAGAAGAGAATCTACGCAGAGAGAAGATCATAGACTTATAGGATCTAGGGATGACTGGTCTGATCATTTAAAAGGTGATTTATCTTTTCAAGATGATAGGAGGGATTTCTTCCCTAGAGAGTATAAAAGAGACCTAGCAATGAGAGATGATCAAAGAGATTATGCACCAAGGTTCAACAAAGATTTGCATGAAAGAAATGATCGTAGGggtcttttgataaaaactgaTTGTGATGATTCTATCTTTAGAAGTGATCGTCAAGGTTCATTTTTCAGAGACGATACCAATTCAATACAAGATAGTCAAAGAGATACATTAGTTAAAGACTCTTATCGTGACTTTTCCTTTAAAGACCAATCTAGAGTTTTCCGTGATAGCAGAGATAAAGCTATATATTCTAGAAATGAGGATGTCAATGGATTAAAAGATTCTTATAGAGATGTTGTGAGAGATCCTCCTGGACCTGAAAGTTTTAGGGGAAACTTCCCAACCAAAACCGTATATGAATCATATCTTAGAGAAAATGTGCCTTATCcaactaaaaatgaatatcaaGACACAGCTTTTAAAGGAAGGGATTTTTTACTTGATAGTAAGAGAGAGTATCCAGGCAGAGAAAATCGAAATACTCTACTGAGAGATTTTCCAATTCAAGAAAGAGATTTGCTTCAAAGAAGTCAAGATTTTCCACATAATGATCAGCGTGGATCAGTTTATGATAATGGATCTTTACATCCTAAAAGTGAACTCAGAAGGCGCCCTGATGAAATCAATCCATTATTATCAAAGGAAGATTATAGAAAACTGCCAAGTTCAACCACACCAACATATTATAGTCAGAGAACTGGAGATACTGATGGAGCCACCTCTTTTAGAGAAGAAAGGTATACTGATAGCAGAGTTAGTGATTTTCGTGATATGCGGAGATCATCAGCTTTTCAGGACAGTTATATTGACTCTAcaatttatccaaaaaatcaaagtagtTCTTTGAGTTATGATTCTTATGAAGAAAGCAGATTGGAAGTAACTACTCGGATTGGTGGTAGTAAGTCTGAAGATTATCCTAAGCAGCATCAGTTTAGTGATTTAAGGTTTAACGATGCATCAGTTTCAGGAAGACAAGATCCTTATCCAACTTTGAATAACCAACCATTACGGAAACCCCAAGATTCATTGAATAATAGTTTGTTAAGTTCTAGAAGAGAACAATTTCTTGCTCATGACCAAGCTGCTTCTTCACAGCAGTATACAAATAGACCTTATGTTAAGcaggaaaaagattttattgacAAGTATTCATACCATGCTCTTGACTCTAAGTTAAAAGATGACGGATATAGGGCTGGTGCAAAATCGTCATCTTATTACGATCAAGTTGACACTAAGCCCTATCAAGAAATATCAAGAAATGATAATTTACTTTCTGATGCTAAAGGTTATTCTCTAAGTGATGAGTATGATCAAAGGTATTCTGAGAATTGTGGTGTTCGAAATAATCAAGCTTATAGCAGGGACCATCCTGATGTTAAGATTTTAGATATGCAAAGGGTTGTTGACTCAAGGTATTGGAACGAAAGAAGTGGGATGAAGGAAGATTCACCATTTCAACTGAAATCTCGGCAACCATATGTTCAAGAGGCCTTACCATCTAAGTATCAATCTGATATTAATGCCAGAGAAATTCTATATAAAAGAACTCCATCTGAGAGATTCGATACAACATTGGCTTCACAAATCTCTTTGCCATCATTTACTGCAACTCATACTAGAGAAGATTTTAGAGATAGGCAGTTGCGTAATGAAAGTAATCGATATGGCCCTGATTCTGATTACCTGAGGGATCAGCAACTCAGTGgttttaacaaagaaactCAAAAATCAGTAAATGATGTTACCACATCTCAGAGCTACCAAACTCAGATGACAACTTCTACTGCTAATTATCAGCCAGTTAAATACACTGGAACTTCATTATCCACTCAAAGTTATAGTCGTGACCAGGGCCTTTTGAAATCAAATGAACCTGTAGCTCAGTCAACATATAATCAGTTTTCACAGCAAGCTAGTTCACAGTCTATATCTACAACTATGCCTCAAAAACCTACTACAGATGCATTACCAGGAAGTCAAACATATGAGCAGCAACAACAAGATTATCAAAAAGCTTACAGTCAGTGGTATGCTAATTATGCTCAAGCATTTGCTCAGCTGGcacaacaaaatttgaaataa

Transcript

BRAKERKRET00000012161

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9BUJ2	Heterogeneous nuclear ribonucleoprotein U-like protein 1 OS=Homo sapiens OX=9606 GN=HNRNPUL1 PE=1 SV=2
Q8VDM6	Heterogeneous nuclear ribonucleoprotein U-like protein 1 OS=Mus musculus OX=10090 GN=Hnrnpul1 PE=1 SV=1
Q00839	Heterogeneous nuclear ribonucleoprotein U OS=Homo sapiens OX=9606 GN=HNRNPU PE=1 SV=6

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001450 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13671 all species →	AAA_33	AAA domain	Domain	Interproscan
PF00622 all species →	SPRY	SPRY domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001870 all species →	Domain	B30.2/SPRY domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003877 all species →	Domain	SPRY domain	Interproscan
IPR035778 all species →	Domain	Heterogeneous nuclear ribonucleoprotein U, SPRY domain	Interproscan
IPR043136 all species →	Homologous_superfamily	B30.2/SPRY domain superfamily	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12381 all species →	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN U FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15047	HNRNPUL1, E1BAP5; heterogeneous nuclear ribonucleoprotein U-like protein 1	-	Influenza A	ko05164	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000012161.1 across 29 RNA-seq samples of Hydra viridissima. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

10TPM > 0

7Conditions

23.5Max TPM

6.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole body	18	2	1.60	16.90
Whole	6	5	15.69	23.53
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	1	18.62	18.62
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	1	23.21	23.21
symbioic hydra M9 strain · symbioic hydra rep1	1	1	14.59	14.59
symbioic hydra M9 strain · symbioic hydra rep2	1	0	0.00	0.00
unannotated	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977	16.90
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977	11.87
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397	23.53
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397	20.82
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397	19.54
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397	15.76
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397	14.51
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397	0.00
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902	18.62
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902	23.21
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902	14.59
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902	0.00
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636	0.00

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.