Gene detail

Detailed information of BRAKERKREP00000012207.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: XP_047132984.1, bromodomain adjacent to zinc finger domain protein 1A [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

BRAKERKRET00000012207

ATGCCTCTCTTACGTAAAAAACCATTTGTACAGGAACAAGTTCCACCTAATTTAAAAGCAGATGATGAAGTTTTTTACTGTCATCTTACTGGAGAAGTGTTTCAAGATTATGAagcaTTTTACCAGCGAATGATATTGTGTAATAGTTTAGTATGGAGTTGTGAGTTAAGTTTAAGACCAAATCTTACTTACAAAGAAGCACAAGAATCTGAAGAAAATATTCGAAAAACATTGGAGGTATTGCCTGTTCCACTTAAAAGGTCCGTCTTAATGCTGGTTCATCACACTCGGCGTTCTAAAGTTCAAATCTTATGCGATGATATTTTTGACTTTCTCAAAAATCGTTaccaaataaatgaaaaattagaGGGAAAGATTAATGGCAAGTGGGAAAAGGGGATTGTTACTGAAGTgccaaatatttcaaatgtcACATTCATTTGCAAACATGCTATACCTTCAACTGTTGTTTCTCTTAAGTCCcccaataaaaataagattaaacaACAATCTTTTATGGATCACAAAGATACATGGCCAGAGCCCAATTCTTTGGAATACAAGTTTGAAATTCTTAAAGGTTCACTAAAAGGAACATTTGTACCTTTAAAAGGAAATTGTGTTAGACGAGAAAAAGgtatatttgtaaaagaaaaattgaaaatgttccTGAAGCAGTGTTGTCTCAGAACTACTACTTCTAGTGATGATGGCTACTGGATTGTTAAGccATCAGAAGTAAATAGGTACTCTTTGGGGATGACTTCTATTATTTCACCTGAAGTTAAATCCTTTTCCAagaaagcaaagaaaaaagaaagttcaggGGCGTTGAAGgggaatttgaaaaatgagtCTTCACTGGAATCAAAACCAGAAGATTTAGCAcctaaattatcaaaaaagaaagaaaaagatgaagaaaaagcaagaaaaaaagatgaaaaagagaaaGAAAAAGAAGTgttaaatgatattaaaaaattagaaaatgattttgtgaAAGAGTTTCAAAAACCTAGGGAAGACTTGCAGTTAGAAGattcaaagCCTTTCCCAACACTGGTACCATTTAAATGCAAACTTGAACCAGAGTTAGTTGGTGATGCCATAATGGTGGTTGAGTTTGTAAACATCTTTGGAGCCTTGTTAAATATATCTAAAGAACTAGatacaaaaattacttttgAGTGGCTTGAAGAAGCTCTTCTTGAGCATGATGCAGAAggaaagtattttaaactgCTCAAATCCCTTCTTCATTCCTATCTTTGTATGGAACaagaagaaacaaaacaagtaGAAGTTGATGAGCACTCGTCCAATTCAGGTGATGAAACTTCAGCTCTGTCTTCAACAGGGTTTCAATCTAACAATGTTGATTTAATTGAGGCAAAAGAAACTTCTCAGAGTTCAAGAGCAGCAGCAGCCTGGCCTTTACTGCATCAAGGGATGGCTCTTCATGAGATACCAATTGAACCATTTTCTTTGACAGAAATTTTACGTCTGCATATTCTCTCGTCAGGGATTAAAACTAattctcGAATTAACTGGGTGGATTGGCAACGTCGAGGACAGCAGCAACTATCAGATAATCCTTGTGTATCTTTCCGCCATACTGAATATGATATAATGAACAATTTAGTAACAAAGTGCATTTATGATTTTCCACCTAAAGACAAATtgaaaattcttgttttaataTGCAATCAAGCTCTCATGTTATCAACTGTGAGAGAGTATATGGAAGATGCTTTTGacaaATTGAAAGAACTAAGGAAACAACTTCGAGATATTCAGCATGAAGAGTCAAAGCGAAAGCAACttgttcaaaaagaaaaatggcaaaaagTGCTTGCTGACAGGAATAAGCACAgagaagaaatgaaaaaaaagaaagagcaaaagaaacttgatgtgaaaacaaaagacgatcaaaaagaagaagatcttcaacttgaaaaacaaaagaaagaagcTAAGGATAAAAAGATGGAGGAatcttttgttgaaaaatatcagCTGAAGGagtctgaaattttaaaagaaatctttaattacaatttaGTGATAAATGAAAAACCATTAGGGCAAGATAGAGCTTTTCGTAACTATTGGAATTTGGTATATACTGATGGACTTCTTGTAGAAAATAATGATGGTGGAGCATTTTTTCTTGCAAATACTTCAGATTATGAAAGTGAAGAAAGTGATCTGGAATTATCAGGTAACGAAAGAAAAGATGTTGCTAACAAGCAGTCATTTTTACCAAATGTGACAGTTAAGGATATAGTAGaagctaaagaaaataatagatCTATTgaagatttagtttttaaacgtTATAAACTGCcttattcaaacaaaatccATGAACTATGTAATAAAAGTACTATCTTAAAAACTCATATGGATAGCATTAAAAATGGTGAAGATCTTTCAATATATTCGGCTAGATGTTCAACAAAGTGGTTTTCAGTAACTAGTAAAGAGCAATTAGAATCTATAATTGACTCACTGAACTCTCGTGGTATACGAGAGCGTTTACTGAAGATAAATTTATCTCAAAAGaaagaacaaattttgaattattatgataaaaaacaagaattagagttaaaaaaaggaactaGGAGGgaaaaattaagtaataagCAAGACGATAAGAACGATATTGACAAGAGCATGTTTAAAACAATGGATGATTTTATTGAAGCAAATTTGTGCGACCAATTAGTAGAGTTAGAAGAACAACTTTGGGTGGCTGGTTTAGGTGGTTGTAAAGAAAATAGATTAGAATGGCGATTAAAGATGGAAgagaaaatgatgaaattaGTTAGTAATGTACCAGTATTAAGCAATGAcactgaaaaaagtaaaactaataATGAACAGTTTGTAAATGGTCATTCAGAAAGTGAAATTGatcatgaaaataaagttactaGAACAGAGCATGAGGGGGATTCTAAACCAGTTGTTAAATTGCCACTTCACTTACACAAAAAAGATACATCTCGGTGTAGTACACCAGTCATAATTCCAGACTCTGAGAAACAAGTTGCTGTTGCTGAACTCTCTCAGGAGCTCTTTAAGatTATGAAGAGTGTTGAAATGAAGTACTTAAAACCTCCTCTTGGAGAAACTGAAGAGACACGCAGGTTGCGTATCAAAGAAATGATTGAGGCTGCAAAAGCAGAATCAgaagtaaataaagttaaaaaactagaGAAGATAGAAGAagaggaacaaaaaaaatcatctacatGTCTAAATCGTTGGCAAGAATCTCTGCTGAAATGCATGAATTTTTCTCAAGTGTTTGTGCATCTGTATACACTAGACCGTTCAATCATCTGGGATAAATCTGTCCAACATGTTAAATGTAGAATTTGTAGAAGAAAAGGTGATGAAGATGAAATGCTGTTGTGCGATGGTTGTGATCGAGGTTTTCATATGAGCTGCTTAAATCCTCCTCTTAAGAAAGTTCCTGTTGGTAACTGGTATTGTAGTGACTGTCGTCCAGTAGAAATAAGAAGGggttatcaaaaacatttatcgaAATATAAAGGTGATACAGAGGAGGATGAAGAAGTTAGTGAAAAAGAAGAGGAATATGAAGAGAGCGAATCTGAAGATGATTTTGATGCGGCTAATGATAATTATCAagttgatgatgataatgatgatggaGATGAAGATGAAAGTGATGCTTCTGAGCACAACGAATTATGCACTGTGTGTAATAAAGATGGTACCTTAATTTTATGTGAAGACTGCCCACGTGGTTTTCATGTTGAATGTGTTTATCCTCCTATCAAAAAAATTCCCCGGGGTTCTTGGACTTGTCAAATTTGCAGAGGAGCTGACCAGGATCTTCCTTTAAGAAAAAGGGCTTTAACAATAGAAAATCAAAGAGAAAAAGTAAGTTTGGGTTTGATGTCTAAAAATGGCAAGAAGCAGAGTAAAAAAGAGCATTCAAAGTCAAAAGCACAAAAACGGCATGCTTCCCCATCTACTGACAATACTTCTAAGAGAGCAAGACTAGAAATAAGTGGAGATACACAAGAATTATCTAATTCATTATGCCGTTCGACAACAGCATTATCAAGACAACAGCTAAAGCAATGCACTGGACTTataaatgagatttttaaacGGACAGAAGcagaactttttctttttcctgtGGACTTAGATGAGgtTCCTGATTACACCGACTTTATTGATACTCCGATGGATTTCTCTACAATCAAATCAAAACTGAAAGATGGAGTTTATTCTGATATCAGTAGTTTTATCTCTGATATCCATCTCATTTTTAGTAACTGTGATACATACAACCCACCTTGCTCACATGTGGTCCGTAATGGTAGAcaacttaaaacatttattaacaagaaactaaaagatttaaaacttctataa

Transcript

BRAKERKRET00000012207

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NRL2	Bromodomain adjacent to zinc finger domain protein 1A OS=Homo sapiens OX=9606 GN=BAZ1A PE=1 SV=2
O88379	Bromodomain adjacent to zinc finger domain protein 1A OS=Mus musculus OX=10090 GN=Baz1a PE=1 SV=3
Q8UVR5	Bromodomain adjacent to zinc finger domain protein 1A (Fragment) OS=Xenopus laevis OX=8355 GN=baz1a PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005027 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00439 all species →	Bromodomain	Bromodomain	Domain	Interproscan
PF15613 all species →	WSD	Williams-Beuren syndrome DDT (WSD), D-TOX E motif	Family	Interproscan
PF02791 all species →	DDT	DDT domain	Family	Interproscan
PF10537 all species →	WAC_Acf1_DNA_bd	ATP-utilising chromatin assembly and remodelling N-terminal	Domain	Interproscan
PF00628 all species →	PHD	PHD-finger	Domain	Interproscan
PF15612 all species →	WHIM1	WSTF, HB1, Itc1p, MBD9 motif 1	Motif	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019787 all species →	Domain	Zinc finger, PHD-finger	Interproscan
IPR001487 all species →	Domain	Bromodomain	Interproscan
IPR001965 all species →	Domain	Zinc finger, PHD-type	Interproscan
IPR047171 all species →	Family	Bromodomain adjacent to zinc finger domain protein 1A	Interproscan
IPR036427 all species →	Homologous_superfamily	Bromodomain-like superfamily	Interproscan
IPR018359 all species →	Conserved_site	Bromodomain, conserved site	Interproscan
IPR019786 all species →	Conserved_site	Zinc finger, PHD-type, conserved site	Interproscan
IPR028941 all species →	Domain	WHIM2 domain	Interproscan
IPR018501 all species →	Domain	DDT domain	Interproscan
IPR013136 all species →	Domain	WSTF/Acf1/Cbp146	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR028942 all species →	Domain	WHIM1 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46510 all species →	BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 1A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000228 all species →	Cellular Component	nuclear chromosome	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008623 all species →	Cellular Component	CHRAC	Interproscan
GO:0031445 all species →	Biological Process	regulation of heterochromatin formation	Interproscan
GO:0045740 all species →	Biological Process	positive regulation of DNA replication	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11655	BAZ1A, ACF1; bromodomain adjacent to zinc finger domain protein 1A	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000012207.1 across 29 RNA-seq samples of Hydra viridissima. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

1TPM > 0

7Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole body	18	0	0.00	0.00
Whole	6	0	0.00	0.00
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	1	0.01	0.01
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	0	0.00	0.00
symbioic hydra M9 strain · symbioic hydra rep1	1	0	0.00	0.00
symbioic hydra M9 strain · symbioic hydra rep2	1	0	0.00	0.00
unannotated	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397	0.00
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397	0.00
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397	0.00
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397	0.00
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397	0.00
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397	0.00
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902	0.01
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902	0.00
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902	0.00
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902	0.00
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636	0.00

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.