Gene detail

Detailed information of BRAKERKREP00000012221.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: XP_002162828.1, eukaryotic translation initiation factor 5 [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P59325	Eukaryotic translation initiation factor 5 OS=Mus musculus OX=10090 GN=Eif5 PE=1 SV=1
Q07205	Eukaryotic translation initiation factor 5 OS=Rattus norvegicus OX=10116 GN=Eif5 PE=1 SV=1
P55010	Eukaryotic translation initiation factor 5 OS=Homo sapiens OX=9606 GN=EIF5 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008361 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02020 all species →	W2	eIF4-gamma/eIF5/eIF2-epsilon	Repeat	Interproscan
PF01873 all species →	eIF-5_eIF-2B	Domain found in IF2B/IF5	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016190 all species →	Homologous_superfamily	Translation initiation factor IF2/IF5, zinc-binding	Interproscan
IPR003307 all species →	Domain	W2 domain	Interproscan
IPR002735 all species →	Domain	Translation initiation factor IF2/IF5 domain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR016189 all species →	Homologous_superfamily	Translation initiation factor IF2/IF5, N-terminal	Interproscan
IPR045196 all species →	Family	Translation initiation factor IF2/IF5	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23001 all species →	EUKARYOTIC TRANSLATION INITIATION FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003743 all species →	Molecular Function	translation initiation factor activity	Interproscan
GO:0006413 all species →	Biological Process	translational initiation	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0001731 all species →	Biological Process	formation of translation preinitiation complex	Interproscan
GO:0001732 all species →	Biological Process	formation of cytoplasmic translation initiation complex	Interproscan
GO:0005092 all species →	Molecular Function	GDP-dissociation inhibitor activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0071074 all species →	Molecular Function	eukaryotic initiation factor eIF2 binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03262	EIF5; translation initiation factor 5	-	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000012221.1 across 29 RNA-seq samples of Hydra viridissima. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

19TPM > 0

7Conditions

83.0Max TPM

11.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole body	18	10	16.37	82.97
Whole	6	5	1.27	2.08
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	1	1.55	1.55
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	1	1.54	1.54
symbioic hydra M9 strain · symbioic hydra rep1	1	1	0.05	0.05
symbioic hydra M9 strain · symbioic hydra rep2	1	0	0.00	0.00
unannotated	1	1	35.88	35.88

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977	82.97
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977	51.17
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977	46.31
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977	27.45
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977	24.59
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977	24.51
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977	20.62
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977	13.25
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977	2.36
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977	1.39
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397	2.08
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397	2.00
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397	1.64
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397	0.95
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397	0.92
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397	0.00
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902	1.55
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902	1.54
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902	0.05
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902	0.00
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636	35.88

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.