Gene detail

Detailed information of BRAKERKREP00000012397.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: XP_012557475.2, uncharacterized protein LOC100215679 [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

BRAKERKRET00000012397

ATGCATGTCACAAATGATAAAGAGAAAATCCTCATTCCAATTGGATCTTTCCGATCTGAAgtagatattaaaaagtatctTCCTGCTGAACTTTACAGCCAAATATTTGACGAAATAAGTGACAGTCTAAAGATCAGTGAACTTGTTCAAATCAAACCAAACGATAGGAATGTTTATCTGAACCATGCTGCTTTTGGTCGTGCATATAATGATGTAGTTTCGCTAAGCCTGCAGCTGAAAGATTTTGCTGAAGCTAATCCTGACGTCTTTTATGATCAGCTCTGTTTGCCTCTTATCAACTACACTTACCAAGTGCTCTCTGAATTCTTTAATACTGAAAACGTTCTTCTTGTTCCCAATTGTACATTCGGAATGAATGCTATTGCCAATTACTTGATACGAGAGAGAGAACATTCAAAGGTAGCTTTATTGAATCCTATATACGGTGCAACAAAGAAGCTATTAGAATCGTTTAAACATGATGGTTTATTGAGTGAATTGCGGCAAATTTCTCCTGGTGAAAACGCGTTGTTAGAAGAAGATCCAATAGTGTTTTTAACATCCCTTGTAAAAGCACACAATGATTGTGGTTTTAAAGTGTTGTTCTGCGATGCAGTAGCCAGTCAGAGTGGCAGAATATTGCCTTTGAAAGAGATTATCCAGTTTTGCAAGATAAGAAATATCATTTTAGTTGTTGACGGAACTCAGAGCTGTGAGCTCCTGTTAGAGAATAACATTGAAATGCTTCAGGAAGttgattattttataatgaGCACCCATAAATGGGTAGGTAACGCTAAATCTTGCGGTGTAATTCGTTTTAAAGATGTTGAAACATGCCCCAGGCCTCCTGCAATATCGTTTGGTTGGCAATCTTTAAAGGAAAAGTCATACTCGCAAATTAAAGCTGGTTATATGTGGTTAGGGATGTCAGATACGTATATTTCATACATAACATTgtcaaaagcaataaaaatgttcaaaaagtACGGTAGAGCTCAACTGCAATACGCTGCTAGCCTTTTGAATGAGGGGATAATGAACACACTATGTGTGAAGCCTCTACTATCTACAACAAAAGCAAGCAGagtcataaatatatttgaattggAGAGTGGTCAGTTTTCACCAATAAAAAACCCTAATGATGTCCAAAAAGCGATTCAAGATTATGGGGTGTTTGTTTCTGTAAAGACCCCCAAACAAGACTGTTTTGTAAATGAAGAGGATGTTAAACTTataattacagaaaaaagtaaagaaagcatagaaaaaatttatggtGCGATAGAAAACGCTTTCAACAACGGAAGCAGTATTCTAAACAAcggaaaaaatctaaaaaatgggAGTAACAGCTATAGTTCTGAAGAAAAGGTGGCAGACCAACTCTTGTGTACAAAACTGCcacaaaataattatgtaaGGATATCTACATGGTCTTACAACACACCTagtgattttgatttttttgctaaagtATGTAATAATAATCTTGCTCTGGTGAAAACAACTGATGATGGGATGCGGCGACAgtttttgtatacttttgaTCTTTACGAAAGGCTTTtctcagttttaaaaacaaaagctttttttattcgagCTGAGCGCCTTCGTCACCaccttattttttactatgcCCACACTGCCGtactttatgtaaataaactcGTAGTAAGTGGTTATTTGGATGCAAGTATGAGAATTGATCCGGTATTAGAATCAATTATGTCTGTTGGAGTTGACGAAATGTCTTGGGACGATTTGCTTGAAGATAACTATGTCTGGTCTAATTTTTCGCATGAACAGAAGACagaatatcttcaaaaaattaaaaaatatcgaCGAGAAGTTAAGGAGCTTGTGTTAAAAATGCTCGATAACCACCCAATAAATCACCCTATCAGTCCAAAAAGTTTGCACTGGGTAATACTAATGGGAATGGAACACGAAAAAATTCACCTCGAAACTAGTGCGGTAATCATTTCACAAGTGCCTCTGGATCTTATAAAGAAAAAGCACGACTTTAATTTCCCAGTATATACTTCAAAGAAAACAGCCATTTCCGAAACCAGCTTATTTGAAAGATCAAAAATTTGCGAAGGAAAAAATACGTTAATTGACATTCCTGGTGGTAGGGTTTTAATGGGAAAGGATAACTTAGAAAGTGACCTTTTTGGATGGGACAACGAGTTTGGTTcggaagaaaaaatattgctacCTTTTAAAGCCAGCCAGATGCTTGTTTCAAACGCCgaatatttagaatttattgAAGCTGGTGGGTACACGGAATTAGGCAAAAAGTGGTGGTCACCTGAAGGCTGGCGTTACGTCActgatttaaaagttacaatgCCTCGATTTTGGGTAAATAAGTCTACTTACAGGTCCTTATTAAAAGAGATACCTATGCCTTGGGATTTTCCCGTTGAAGTGAATAACTTGGAAGCGGAGGCGTTTTGTAAATGGAAAAGCGAATCTAGTGGAATTGACGTGCGACTTTTATCTCATGAGGAATCTTTCCACATGAGGCAATTAGTGCAATTCGAAACATCAAACACAAATCTGAACAAGTTTGCTTCACCAACGCCCGTAAACCTTTTCGGTGGGGTTATAGCAGGACAAATGGTTTATGATGTTTCTGGGAATGTTTGGCGTCATAGCGTTTCTGTTTTAACAGTTATGAATGGGTTTAGAATGGATCCTATTTATGATGATTACACTCTGCCAACGATTGATGGGTTCCATAATCACATTTTAGGAGGATCTTGGATATCACTAGGAAATTTGGCAAATTTAAATGCGAGATATGGTTTTAGACGACACTTTTATCAATACGCTGGCATTCGTTACGTAAACAGCATGAATACTTTCCACAGCAGagttccaaaaatgtttgataatttGGTTATTGGACAAAAATTAACTGAGCATTACACTGATTTCGATGTGGACACCCTCGTGGAGAAAAAACCAGTTCTAAATTGGCCATACATTCTTGGCATCAAAGCAGCTAATTTCATTAACGAAAACTTTCGTCAACAAAATGacgcaaaaaaattaaaaattttattagtgtACGGAGGCGCTGGACGAACGGCTTTAGAAATATTAAGGAGTTGCAACAACGTAGACATTGAATTTACAGATAGAACGGCTAACAACTTGCAACTATTAgaaagtcttttaaaagattcttcAATAAATTGGTTTCAGAAACTCGAAGGAGAAATAGCAGAGCCGAAATCTTTTCATCTGAAATCTGATGAGTGCGAAAACAAGCTTCTTGAGGAAAAGAACAATACCATCTCATTTTGGCAAACCGACTACAATAATATCAAGCCAATGCTAAAAGATTACGACTTGATTGTTGCAGATTTCAGGCACAAAAATGCAAGCAGCGAGCTGCTACAAATGACTCAAAGGTTAAAGGTAAACGGATCACTAATATTGGGTAGCATTGATGACGTCAGTTTGGAAATATTTGATGAACAGCATTCGTTAtcagttttgaaagaaaactttCAATCATTGGATAAAATCACTGAACATCCACACATGTATATGGAAACAAGAAACAAACATCAGTACGCCATATCTTATCTATCTATATGGAAAAAGACCTCTAGTTTTACAGAAAATGTTCAACCCTCTTTAACACGTGAAAATGAAATACTGACGACAGCTCAGTACTACGAAgatcaaaacattttgacaTCGTATGAGAAATTTCACTACGGAGAAGgtcttctttctgttaaaaattttccacTACATGTGGCTGAGGTTTGCATAAATGCTGCGCTTAAATACAAAACTGGATTAGAAGTAGCTCTTGACGCAGGTTGTGGACCAGGGAGAACTGCGATCgaattttgcaaaacttttaagaagGTGGAAGCGTACGACTACTCAAATGGTTTTTTGGGATTACTATAcgctgaaataaaaaaaagaagtatttcaAATCTGATAACTTACCAAGGTGACAGCCATCatcaacaaaagatttgtgtTGAGCAGATGTTTGATCTCATACTTGGTTGCAATCTTATTGATCGGCTGCATACTCCACAAGAATGGTTAACTCAGTCTaagGCGATGCTGAAGCCAAACGGGATTTTCGTTGTATCCTCCCCTTATACATGGCAGAAAGAACATACAGAAGTCAGCAAATGGGTCggaggaataaaaaaaaatggcgaaaACTACTTCACTTTGGAaggtttaaaagaaatcttgtCGCCAGAACTTGTACTCTTAGAGATTGTAAAAATACCATTTGTTATTCCAGATGCGGACGGGACCTATCAGTATACTTATAGCAACTGCACAATATTCGGAGCGCCGCAATTGGCTGTctctaattaa

Transcript

BRAKERKRET00000012397

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0R5N0	Hercynine oxygenase OS=Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) OX=246196 GN=egtB PE=1 SV=1
Q7D513	Hercynine oxygenase OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=egtB PE=2 SV=1
O69671	Hercynine oxygenase OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=egtB PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002544 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13847 all species →	Methyltransf_31	Methyltransferase domain	Domain	Interproscan
PF00266 all species →	Aminotran_5	Aminotransferase class-V	Domain	Interproscan
PF03781 all species →	FGE-sulfatase	Sulfatase-modifying factor enzyme 1	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR025714 all species →	Domain	Methyltransferase domain	Interproscan
IPR016187 all species →	Homologous_superfamily	C-type lectin fold	Interproscan
IPR000192 all species →	Domain	Aminotransferase class V domain	Interproscan
IPR042095 all species →	Homologous_superfamily	Sulfatase-modifying factor enzyme superfamily	Interproscan
IPR015421 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR015422 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR005532 all species →	Domain	Sulfatase-modifying factor enzyme	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR051043 all species →	Family	Sulfatase Modifying Factor and Kinase	Interproscan
IPR027577 all species →	Family	5-histidylcysteine sulfoxide synthase	Interproscan
IPR015424 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23150 all species →	SULFATASE MODIFYING FACTOR 1, 2	Interproscan

Gene Ontology

No Gene Ontology signature was detected for BRAKERKREP00000012397.1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKREP00000012397.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000012397.1 across 29 RNA-seq samples of Hydra viridissima. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

6TPM > 0

7Conditions

0.5Max TPM

0.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole body	18	2	0.03	0.50
Whole	6	4	0.19	0.50
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	0	0.00	0.00
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	0	0.00	0.00
symbioic hydra M9 strain · symbioic hydra rep1	1	0	0.00	0.00
symbioic hydra M9 strain · symbioic hydra rep2	1	0	0.00	0.00
unannotated	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977	0.50
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977	0.08
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397	0.50
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397	0.31
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397	0.31
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397	0.04
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397	0.00
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397	0.00
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902	0.00
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902	0.00
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902	0.00
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902	0.00
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636	0.00

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.