Gene detail

Detailed information of BRAKERKREP00000012493.1 in Hydra viridissima

Genomic Location: :...
NR annotation: XP_047140567.1, ATP-dependent RNA helicase DDX1 isoform X2 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERKRET00000012493

ATGGCTGGGCATTTTTCAGAATTTGGAATATTACCAGAGCTATTAAAAGGCATCGATGAAATGGGATGGATGCTTCCAACAGACATTCAGGCAGAAGCGATTCCAATGATTCTTGGTGGTGGTGATGTCCTTATGgCAGCAGAAACTGGCAGTGGGAAAACCGGTgCATTTTGTCTCCCAGTCATACAAGTTGTTCATGagaatattattgaaaattcaGGTGGTGGGggagtaaaaaataaagccaACAATaataaaggaaaatGGGAAATGAACAAGCTTGATAGAAGCAGCTcatttgCCATTTCAGAAGATGGATTGCTCTGTCAATCACGAGAGCAAAAAGAGTGGCAAGGATCTCGATCAACTCTTGGTGTAAcaaaagGCAGTTACTACTATGAAGTTAAAGTGACTGATGAAGGTTTATGCAGAGTGGGATTTTCAACAGATAATGCATCATTGGAAATtgGATGTGATCCTGAAAGTTTTGGCTTTGGTGGTACTggtaaaaaatcaacaaacaaGCAATTTGATACATATGGTGAGCCATATGGGAAAAATGATGTGATTGGTTGTTTCATAAGTTTGGATAATGGGACTATAAAGTACAGTAAAAATGGGAAAGACTTAGGACATGCCTTTGACAtaccaaaaaaactttatggatcaacattttttgcttCTGTGACTTTAAAGaatgctgaacttttgtttaattttggaGATACACCATTAAAGTACCCTCCTCAAGCTACCTATCTTCCATTATCTAAAGCTACTGATACTTCCATATCCAAAAAGTtgtcaGGATCCAAAAAGTATACAAACAGATCTTCTCCAGCAGCTCTCATAATGGAGccaTCAAGAGAACTAGCCACTCAGactcATGATCAAATTTCgcttttcaaaaagtatatgcctgatccaaaaataaaaAATGTGTTATTGGTGGGTGGAGAAAGTTCAAGTGAGCAAATAAAAGCTTTGCAAAGTGGGGTTGATATTGTTACTGGGACACCTGGAAAACTGGATGATTTCGTATCCTCTGGAAACTTACTCTTAgatcaaGTTCGATTCCTAATACTTGATGAAGTGGATGGTCTGTTAAATCAAAATCAGGGTCAATTAATAGAAAGATTATACAATCAATGTCCAAAAATGTCTCCTGGTGGCAAAAGATTACAGgttATAGTATGCAGTGCAACTCTGCATAATTTTGATGTTCAAAAGTTGGcagAGAAGATAATGCATTTTCCTACATGGATTGATTTAAAAGGTCAAGATTCTGTGCCAGATACAGTTCACCATGTTGTGTGTAATGTTGATCCAAGAAGTGATACGTCATGGCATTttctaaagaataaaatacaaACTGATGGCATTCATAAAAGCGATGACACCCACCCAACATCTAAATTGCCTGAATGCTTTTCTGAGGCTGTTAAAGTCCTCAAAGGCGAGTATGTTATCAAAGCTATTTCTCAGCTTAAAATGGATCAAGGCATTATATTTTGCCGCACAAAACTCGATTGTGATAATTTAGAAAGATACATGAAGTCAAAAGATGCAACAGAGTTCTCGTGCGTGTGTTTACACAGTGATCGAGCTCCAAAAGAAAGAACTAATAATCTATgggcttttaaaaatagaaaagtaaaatttctgATTTGTACAGATGTGGCAGCAAGAGGCCTCGACATTAAAGGTGTTCCCTTTGTTATCAATGTTACATTGCCTGATGAAAAAGCAAATTATGTTCACAGAATAGGTAGAGTAGGAAGGGCGGAAAGAATGGGTCTTGCTTTGTCACTTGTTTCAAAGTGTAAagaaaagGTTTGGTATCACAAATGCGATAGTCGAGGAGCCAACTGCAACAACacaaaacttataaaagaTGGCGGATGTGCTATTTGGTATGATGAACAGAATTATTTGAGTGAGATTGAAGAGCACTTGGGAGAAACGATTTCACAAATATCAAATGACATGGTTGTGCCAATCAATGAGTTCGATGGAAAAGTTGTATATGGTGAAAAGAGACAGTGCAAAGGTAGCGGATTCAAGTATCATCTTGAAGAACTTGCTCCGGCTGTTAAAGATCTTGCAAAGTTGGAAAAGCAAGTTCAATTGTCTTATCTTCAGTTTAAAACTGACTGGAGGTTGACCATTACATGA

Transcript

BRAKERKRET00000012493

Protein

Uniprot

Uniprot term	Description
A2VD92	ATP-dependent RNA helicase DDX1 OS=Xenopus laevis OX=8355 GN=ddx1 PE=2 SV=1
Q5XH91	ATP-dependent RNA helicase DDX1 OS=Xenopus tropicalis OX=8364 GN=ddx1 PE=2 SV=1
Q4R7L5	ATP-dependent RNA helicase DDX1 OS=Macaca fascicularis OX=9541 GN=DDX1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00622	SPRY	SPRY domain	Family	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR003877	Domain	SPRY domain	Interproscan
IPR001870	Domain	B30.2/SPRY domain	Interproscan
IPR043136	Homologous_superfamily	B30.2/SPRY domain superfamily	Interproscan
IPR014014	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47958	ATP-DEPENDENT RNA HELICASE DBP3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0006364	Biological Process	rRNA processing	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13177	DDX1; ATP-dependent RNA helicase DDX1	EC:5.6.2.7	Transfer RNA biogenesis	ko03016	deepkoala