Gene detail

Detailed information of BRAKERKREP00000012985.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: XP_047140981.1, poly [ADP-ribose] polymerase 1 [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

BRAKERKRET00000012985

atgtctgaAGACCTTCCATTCCAAGCAGAATATGCAAAATCTGGAAGAGCAGGATGTAAGGGCTGCAAATCTAATATTGGGAAAGACTCACTTAGAATTGCAAAAATGGTTCAGTCTCCCCACTTTGATGGAAAGGTCCCGCAGTGGTATCACTATAGTTGTTTTTTCAGAAAGTTTAAGCCAAAAACTATCACTGATATTAGTAACTTTGACAGTTTACGTTGGGAGGATCAAGAAAAAATGAGGGGACAGATTGAATTTCctgaaaataaagatattgttGATGGTCTATCTAATAATAATGTGACTAAAGAATTTTGCATAGAATATGCTAAGTCTGGACGAGCAAAATGCAGAAAgtgtgaagaaaaaattgaaaagGATGTTATCAGAATTGCAAAGATGATGGAACCTGAAGAGTCAAAGTTCAGAGGTCTGGTTCCGTTCTGGTAccatgtaaaatgtttttctttgtgCAAAAATGAACTTGAAGCTCAGAGTCTTACTTCAAGTGAAGTTGATGGTTGGGCAACATTGTCTAAAGAAGACCAGCAGCAAGTTTCAGATGAAGTAAATTTCAGCAAAAGTGGTAATgtgaaattaaagaaaacaaaagactTTAATAAACAAGTATTAAATGTCAAGGATGAACATCAAGagcaatttaaagcCCAAAATAAAGCATATTGGGATATGAGAGACCAGCTGCATAAAAATTGCTCAAGTAATGTGTTGAGAAAGTTGTTggaagtaaataaatataatacgGCTGGAGGAGAAAATAGTCTATTAGAACGGTGCGCTGATGGTATTTGCTTCGGTGCGCTACTAAATTGTCCCGAGTGCAAAGAAGGAAAGTTGGTTTATAGGACAGAGGGTTACCAGTGTACTGGTCATATCAGCGGATGGACAAGTTGCACTTATATAACACAATCGCCAAAACGCAAGATATGGAGAATTCCAAAAGAGTTAAAGGAAGAAAACGAGTTTCTATCAAAATTGAAGCCTAGGGTTGAAGAAAGAATATTTGTATCACAAGTCGGAGTACCAACTGATGTTAAAGTAGAAAGTGAAATTCAACAATCCTCAGTGCGTCCtttagagaataaaaaaattattataattggGAAACTGAAAGAATCAaagGATGTTGTAAGCAATAAAATACAGTTATTAGGTGGAATTCTTTCCCCTACTGTTGTTAAATCTGTTTACTGCTGTTTAAGTACACCTGAGGAAGTTGCAAAGGCcaccaaaaaaatgaaaactgttGAAGCATATGATATTCCAGTGGTTTCAGAAAATTATCTAGATGCTATTCAAAAAGGTGATTCGAATTCTCTCATGCAGTATGCTATTGCACCCTGGGGAGGAAATaGGAAATCATTGAAAGACTTGGAATGTAAGGATCCCATTATGAAGCGGAAAGCTAGTTCATTCGatgcatCTTCCAAAAAAGCAAAGCTCGTAATGAAAGGAGGAGCTGTTGTTGACCCTGATTCAGgTCTTGATGACAAATGTCACATTTTATCAGCTCATGGTGAATTGTTTACTGCGGTACTTGGTCTCGTGGATTTGGTAAAAGGAACAAATTCCTACTATAAAATACAATCTCTTGAGCATGacaccaaaaaaaaGTATTACATTTTTCGATCATGGGGTAGAGTAGGTACAAGTATAGGAGGCAATAAGCTGGAGtctTTTCTTAATCAAGAGGATGcaatacaaaatttcaaagataTATATGTAgaaaaaacagGAAACATGTGGGATAAAcggaaaaaatttataaaatacccATATAAATTCTACCCATTGGATATTGATTATGGCCAGGAAGATGAAACGTTGCAAAGCTCAATTGCTCCTGGCAGTTTAAGTACTTTAGCAAATCCAGTGAAAGAACTTATCAAACTCATCTTTGATGTGGAGGCCATGAAGCATGCTCTTGTTGAATTTGAAaTTGACTTGAAGAAAATGCCACTTGggaagttatcaaaaaaacaaatagaaacaGCGTATGCTTGTCTTGGAGACTgtcaaaaaTTTTTAGCTAAAGATGCTTCAAgatctaaaattttagatgCTTCCAAtcgtttttttacattaatacCACATGATTTTGGAATGAAAAAACCACCATTATTGGATAATGAAGAGCTAATCAAACTTAAGATTGGAATGCTTGATAGTTTAATGGAGATAGAGATTGCATACAACTTGATAAAAGGTACCCAAGCTGATCATGCCAAAGATCCTGTTGATCTACATTATGAAAGTTTAAAGACCAATATTAATgTTGTTGACAAAGAAAGCGATGATTTTAAATTGGTCGTAGAATATGTGAAGAACACACATGCAAAAACTCATTCAAACTATACTCTTGATGTGTTAGAGGTATGA

Transcript

BRAKERKRET00000012985

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P26446	Poly [ADP-ribose] polymerase 1 OS=Gallus gallus OX=9031 GN=PARP1 PE=1 SV=2
P09874	Poly [ADP-ribose] polymerase 1 OS=Homo sapiens OX=9606 GN=PARP1 PE=1 SV=4
Q5RHR0	Poly [ADP-ribose] polymerase 1 OS=Danio rerio OX=7955 GN=parp1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001433 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05406 all species →	WGR	WGR domain	Domain	Interproscan
PF00645 all species →	zf-PARP	Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region	Domain	Interproscan
PF00533 all species →	BRCT	BRCA1 C Terminus (BRCT) domain	Family	Interproscan
PF02877 all species →	PARP_reg	Poly(ADP-ribose) polymerase, regulatory domain	Domain	Interproscan
PF21728 all species →	PADR1_N	PADR1, N-terminal helical domain	Domain	Interproscan
PF08063 all species →	PADR1_Zn_ribbon	PADR1 domain, zinc ribbon fold	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008893 all species →	Domain	WGR domain	Interproscan
IPR036616 all species →	Homologous_superfamily	Poly(ADP-ribose) polymerase, regulatory domain superfamily	Interproscan
IPR038650 all species →	Homologous_superfamily	PADR1, C-terminal domain superfamily	Interproscan
IPR001510 all species →	Domain	Zinc finger, PARP-type	Interproscan
IPR050800 all species →	Family	ADP-ribosyltransferase diphtheria toxin-like	Interproscan
IPR012317 all species →	Domain	Poly(ADP-ribose) polymerase, catalytic domain	Interproscan
IPR036420 all species →	Homologous_superfamily	BRCT domain superfamily	Interproscan
IPR001357 all species →	Domain	BRCT domain	Interproscan
IPR036930 all species →	Homologous_superfamily	WGR domain superfamily	Interproscan
IPR004102 all species →	Domain	Poly(ADP-ribose) polymerase, regulatory domain	Interproscan
IPR049296 all species →	Domain	PARP1-like, PADR1 domain, N-terminal helical subdomain	Interproscan
IPR012982 all species →	Domain	PARP1-like, PADR1 domain, zinc ribbon fold	Interproscan
IPR036957 all species →	Homologous_superfamily	Zinc finger, PARP-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10459 all species →	DNA LIGASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003950 all species →	Molecular Function	NAD+-protein poly-ADP-ribosyltransferase activity	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0006302 all species →	Biological Process	double-strand break repair	Interproscan
GO:0070212 all species →	Biological Process	protein poly-ADP-ribosylation	Interproscan
GO:1990404 all species →	Molecular Function	NAD+-protein ADP-ribosyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKREP00000012985.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000012985.1 across 29 RNA-seq samples of Hydra viridissima. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

0TPM > 0

7Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole body	18	0	0.00	0.00
Whole	6	0	0.00	0.00
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	0	0.00	0.00
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	0	0.00	0.00
symbioic hydra M9 strain · symbioic hydra rep1	1	0	0.00	0.00
symbioic hydra M9 strain · symbioic hydra rep2	1	0	0.00	0.00
unannotated	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.