Gene detail

Detailed information of BRAKERKREP00000013216.1 in Hydra viridissima

Genomic Location: :...
NR annotation: XP_047139557.1, amyloid-beta A4 precursor protein-binding family A member 2 isoform X1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERKRET00000013216

ATGACTGAAAAGCGAGCTGCAAAGTTTTCAGATTATGACAATAAAGCCTTGCTTTCCTCTGGAAGTGAAAGTGATCAGGAATATACAGatatttttgaaagtattggAACTGGTCAAATTCTTTTATCTACATCTTTTGATGATGGGGATTCTAAATCTGTTAGCGATAGTGAAATTGTTGGATACACAGGGGATATAGAAACATACATAGGCTCAAATAATGATGAGAGTGACTGTAATGAAACTGTTCCAAAGTTGCCTGAAGATCAGTTAATTGATTTTAGGTCTGAAAGTACtgtaaataatcaaatatctAAAGATGAAGGATCTTTAATTAAAGGAGGCCTTTCagagtttaataaaaagttattagtcataacaaatgaaaaaaatctgagACCTGGTAAAGCTATTCAAGTAAAACCTATGGAAGatttaaatacttcaaaatCTGACATACAATCTGAGCATGATCATACTCCTGATAAacataatacaaaaacaatacTAGAAGATGAAGTTACAAAGccatttgaagtttttgatcctctttcagaaaaaaatgtgaatgAAAGTTCCCTGAATAACACTTCTTCTAAAACTTCCAATAAACAAGTTAAGCACTCTAATAGAAAACGACCTCGTCATCGTATTTATTTAGATGATCCTGATATCCACCAATTAATTAGCGAGCATGTTGAGTTACTTCGGTGTAAAATGGCTGGTGTAGActctaaagaaattttgaaggTTCCTAGTTTCAATTttcaaaGTCACCATATGACCACAATGCCTGACTTCACATCTCATAATAATACTgctacaaaaaagaaaatagcatTAAATGGACTAACTTCTAATCTCTCATCACATATTCCTACtcaacaaaattattcaatgcAATTCAAAAGTaatcagaatttaaaaactaggAGAGGTCAAAACCTGATATCACGtattagaaatgaaaatatcagTTCAGAAGATGATGATGAGTATACAGAAAGATTAGCAAAAGCTTTATACGAAAAGAATAGTTTACATCAAATTTGTCCTGATTGTGGTGAGTATCATTCACAGGAAGAAGATGATGAAGATATATGTCCTGATTGTGGTGTCTCTCACAATCCATATCAGCATTCACccattaaaaataactctcAGAAGAAAATTGAAAGAGACAATTCTTGCATTAAAACTAATGTTAAATCTGGTAATCGCTATCAACAAATTACAAGCCAACAGgatCCTCGAGATGAAATGGAAGACAGTCTACCAAgtATTGAAGGTCCTCTAAGCATAGATGAGCTTACGTCAGGCTATCGATACAGACTTAAGtaTTTAGGGTCTTGTCAAATTATTACACAGCATCCTGTTACCAAAGAAACAAGACTGCAACAAGCACAAGATGCATACAAAagaattaaaGCCCAGGATGGCGAAGATGAAGTCAGTACAAATGTTGATATGTGCATTTCTTTAGAAagaattaaagttattaataaaGATACAAAGtttGAAGATGTTATGATGGACCATGCATTACGaacagtttgttttatttgtgatatGGGGAAAATTTTAGTCTTGATGGCTCGTCGACTGACCAGTGAAAATTCTACAGATATCAACTTTGAAGAGGGTCAACCGTTCTCCCTAGGAAATTTAGTTGGTGAtcgtgaaaaaaaatcttcaaagaaTATATGTCATGTGTTTGAGGGAGTAGAGgatACATCTTCTATTGCAAAAGCAATTGGCCAAGCATTCAATGTTGCATACAGACAGTTCTTAAAAAGTAATGGGATTGCGCATGAGCTCGTTGAGGAAGCAGAATACTCTCATGTACTAGAGTCACAAATAATTATTGGTCGTGATCTTGAAAATCTTACAGATGAATCTGCTGTTAGGgagGTAGtagtagttaaaaaaagaggtGACCCCCTTGGTATAATGCTGTTAGAATCAGGATGGGGATCCATGTTACCAACAGTCTTTGTTGCACATATAGCAAATTACTCAGCTACTGCTCAGTGTCAGAAGATATCTGTTGGTGATCATATACTAGCTTGTGATGGAATAAGTTTAGTAGGGCTGCCTTTATCAGAATGTACTGCAATTTTAAAgAATTGTCGAGCTGCCAACCGAGTATCATTTCGGGTTGTAACATGTCCTACAGTAGTAGATGTTGTATTGCTAAGACCtgatataaaatatcagttaGGATTCAGCGTTCAGGATGGCACgATTTGCAGCATGTTACGTGGTGGTATAGCTGAGAGAGCAGGAGTACGTGTTGGTCATCGTATAATAGAGATAAACGGTGATAGTGTTGTCGCAAAATCCCACCAATATATTATTGATATACTTGCTCATACGATCGGATCGataagCATGAAGACTATGCCCATAGCTTTATACAGACTCATGGTAGGAGAAGAATTGCCACAACACGTTTGA

Transcript

BRAKERKRET00000013216

Protein

Uniprot

Uniprot term	Description
Q02410	Amyloid-beta A4 precursor protein-binding family A member 1 OS=Homo sapiens OX=9606 GN=APBA1 PE=1 SV=3
B2RUJ5	Amyloid-beta A4 precursor protein-binding family A member 1 OS=Mus musculus OX=10090 GN=Apba1 PE=1 SV=2
P98084	Amyloid-beta A4 precursor protein-binding family A member 2 OS=Mus musculus OX=10090 GN=Apba2 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00640	PID	Phosphotyrosine interaction domain (PTB/PID)	Domain	Interproscan
PF00595	PDZ	PDZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001478	Domain	PDZ domain	Interproscan
IPR036034	Homologous_superfamily	PDZ superfamily	Interproscan
IPR006020	Domain	PTB/PI domain	Interproscan
IPR011993	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR051230	Family	Amyloid-beta A4 Precursor Protein-Binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12345	SYNTENIN RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007268	Biological Process	chemical synaptic transmission	Interproscan
GO:0043197	Cellular Component	dendritic spine	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K04531	APBA1, X11; amyloid beta A4 precursor protein-binding family A member 1	-	Membrane trafficking	ko04131	deepkoala