Genomic Location: not available for this species
NR annotation: XP_047143211.1, CCR4-NOT transcription complex subunit 3 isoform X1 [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families
| CDS |
| BRAKERKRET00000013435 |
| Transcript |
| BRAKERKRET00000013435 |
| Protein |
| BRAKERKREP00000013435.1 |
| UniProt accession | Description |
|---|---|
| Q8K0V4 | CCR4-NOT transcription complex subunit 3 OS=Mus musculus OX=10090 GN=Cnot3 PE=1 SV=1 |
| O75175 | CCR4-NOT transcription complex subunit 3 OS=Homo sapiens OX=9606 GN=CNOT3 PE=1 SV=1 |
| O13870 | General negative regulator of transcription subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=not3 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003085 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF04153 all species → | NOT2_3_5_C | NOT2/NOT3/NOT5 C-terminal | Domain | Interproscan |
| PF04065 all species → | Not3 | Not1 N-terminal domain, CCR4-Not complex component | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR012270 all species → | Family | CCR4-NOT complex, subunit 3/ 5 | Interproscan |
| IPR038635 all species → | Homologous_superfamily | CCR4-NOT complex subunit 2/3/5, C-terminal domain superfamily | Interproscan |
| IPR007282 all species → | Domain | NOT2/NOT3/NOT5, C-terminal | Interproscan |
| IPR007207 all species → | Domain | CCR4-Not complex component, Not N-terminal domain | Interproscan |
| IPR040168 all species → | Family | Not2/Not3/Not5 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR23326 all species → | CCR4 NOT-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006355 all species → | Biological Process | regulation of DNA-templated transcription | Interproscan |
| GO:0030015 all species → | Cellular Component | CCR4-NOT core complex | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0000289 all species → | Biological Process | nuclear-transcribed mRNA poly(A) tail shortening | Interproscan |
| GO:0000932 all species → | Cellular Component | P-body | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K12580 | CNOT3, NOT3; CCR4-NOT transcription complex subunit 3 | - | Messenger RNA biogenesis | ko03019 | deepkoala |
Transcript abundance of BRAKERKREP00000013435.1 across 29 RNA-seq samples of Hydra viridissima. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole body | 18 | 0 | 0.00 | 0.00 | |
| Whole | 6 | 0 | 0.00 | 0.00 | |
| aposymbioic hydra M9 strain · aposymbioic hydra rep1 | 1 | 0 | 0.00 | 0.00 | |
| aposymbioic hydra M9 strain · aposymbioic hydra rep2 | 1 | 0 | 0.00 | 0.00 | |
| symbioic hydra M9 strain · symbioic hydra rep1 | 1 | 0 | 0.00 | 0.00 | |
| symbioic hydra M9 strain · symbioic hydra rep2 | 1 | 0 | 0.00 | 0.00 | |
| unannotated | 1 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM,
StringTie quantification over 29 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
