Gene detail

Detailed information of BRAKERKREP00000013596.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: XP_047145304.1, A disintegrin and metalloproteinase with thrombospondin motifs 6 [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

BRAKERKRET00000013596

atgccATTAACAACATTTGGTCAGGTTGTCTTGGGTCCTCCTGGTTCTGGTAAGTCAACCTACTGTGCTGCAGTAAAAAACTTCCTCACCGGTATTGGTCGTAAAGTGACTATTGTAAATCTTGATCCTGCAAATGACAATATGCCTTTTATACCTGATATTTGTATTACTAGTTTGGTGACTCTTTCTGATGTTATggatttattaaaacttggCCCAAATGGAGGTTGTGACAAAGAGCTTGAGTCTGATGAGTATTTTGACCGCTGTGGTGTATGTAATGGGGATGGAAGCTCATGTGAATTAGTTTCTGGAAATGACTTTGCAACGTATCCTTCTGCTGTAGCACCAGCAGTTCGCTTGAAACAGTGTCAAGGCTTTGGTTCTGAAtatattgattatattttagatGACAAGCAACCTTGCAAGCTTATTTGCGCCACTATTAATTCTGCATATTACTTTGGTAATGTAGAAGATGGAGCAAAATGTTTTCCTGGcactaataataatgatatttgtttaaatggcGTTTGCAAGAGTGTAGGTTGTGACAAAGAGCTTGAGTCTGATGAGTATTTTGACCGCTGTGGTGTATGTAATGGGGATGGAAGCTCATGTGAATTAGTTTCTGGAAATGACTTTGCAACGTATCCTTCTGCTGATATATATCCCATTACGGAAATACCTGAAGGATCATATAAAGTGAGAGTGAAGGAAGTTGGGGatacattaaattttcttgGATTTATGGTTGGTGATGAAACTAATTTAGCAATTTCTTTGCCTGCATACTCTTCAGAATACAATCTAAATGGAACAATCGTTTATTATGACATGCAAAGTTGGTATTTTCCAGATGAAATCCGCATTGATGATAAAACTccgataaaaattaaaatctttctggtaaatttttatgatctACCTTCAGAAGGAATTACTTGGAGTTATGTTAAGTCCACAAGAAGTGTTTTAGAATCTCCAGTTTTAGCATGGAAAGGCTTGCCATGGGATGATTGTAGTAAGTCATGCAGTGGAGGCAGGCAAACACGTAAACTAACATGCATCCGCACAGATGATAATTCACCTGTTAATCGTGAACTATGCTCATCACTTGAACCATTAATTACATCACAAAGTTGTAATAATCAAAATTGCCCACCtgaATGGTTTGTTACTTCTTGGTCAGAATGCTCAAAGTCATGTGGTAATGGAACTTGGACTCGACAGTTATTTTGTTCCATGATGACCATAACTGGTCAAACAGTCCTTCCAGATTCTTCATGTGGTACTAGTCGGCCAGTTTTGGAACTTACTACACAGTGCAATGCTATCATGTGTCCTGCAATATGGCGTTCTACACCATGGAGTCAAtGTAGTAAATCATGCGGTGGTggattaaaaacaagaaaagttatttgtgaGAGAGTTAATGCAGATGGTAGTGTTACAGTTGCACCTGTTCTTGAATGTTCATATCTTGTTCCATTAAGTTCTAGCGAACAATCTATTTCTACAAAGATAACATTTAGATGGTTTGTTACTTCTTGGTCAGAATGCTCAAAGTCATGTGGTAATGGAACTTGGACTCGACAGTTATTTTGTTCCATGATGACCATAACTGGTCAAACAGTCCTTCCAGATTCTTCATGTGGTACTAGTCGGCCAATTTTGGAACTTACTACACAGTGCAATGCTATCATGTGTCCTGCAATATGGCGTTCTACACCATGGAGTCAAtGTAGTAAATCATGCGGTGGTggattaaaaacaagaaaagttaCTTGTGAGAGAGTTAATGCAGATGGTAGTGTTACAGTTGCACCTGTTCTTGAATGTTCATATCTTGTTCCATTTAGTTCTAGCGAACAATgtaCTAAAAACCCATTGTTGTTTTGCTATTCTCCATCAATGGGAAACCTTTTAGACTcaaattgtaatatttctaCCAAACCCACAATTGATTTAAGTGCTCAAAAGTGCAATGATGAGCCATGTGACTACAATAACTGGGTTGTTATCAAAAGCCAGTGTAGTGTCACTTGCGGAAAAGGTTTGGTGTCATTGCATTTGGAGTGTCAAAATAATGCAACTGGTGTTACTGTCACGGATTCTTCTTGTCCTGATAAACAACCAATTATACCAGTTTCTGAGGAATGTGAAATAGGAGTTTGCCCAGAAACATATAACTGGCAAATAACTTATGCAGGTTGCAGTGTTAGTTGTGGGGGAGgtCTGATTCTCTCCAACTTGATTTGCTTTGCTGTATCAAACAAGACTGTAGCTCCTGATATATATTGTGATATAGCTAAGAAGCCATCTTTGCCTCTTGAAACATGTAATGAGGTGCCATGTCCCATAAAATATATCTGGGAGGCATCCTATGGTTCTTGTTCTGTAACATGCTCAAAGGGGGTCCAAGTTCCTATTACTTTGTGCAAGCGTGAAACAGATATGGTTATTGTGAATGCAAGCTTGTGTGATTCAaagaatcaattaaaattgGATTTGAGGCCATGTGACATGGGTGAATGTCCTTCCAATTATTCTTggttaataaaatattctccATGTTCTGTTACTTGCGGAACAGGAAATGAGACAGCTTACAGTGTATGTGTCCGAAATAGTGATCAAGTTGAATTTGATAACTCGATGTGCAACTCTACGCTTAAACCAGATGCATTTGTTCGTACTTGCAATTATGACGAATGTGTTGCCTTGCCACACTATTGGGAAGCTACATATGGGGATTGCGTTGCTGCTTGTGGTGAAGGCTTTAAGCTAAAAATGTTGCGATGTATAGAGCGTTCAACAGGATTTGTTCTACCTTTGAGTGAGTGTACTGGTGATCCAATCCCAGTTGATAAACCATGTCAGAAAGCACCGTGCAAACCAgCATTTGAAACTACTGTCATGCCGCCGTCTTACTCTGTTGGTTGCTATAACGATATCCCAAATCCTCGTCGGGTCCctatatttttggaaaattacAGGAGTCAATAcaaaaagaTAAATGCAACCTACTTCATTCAGCAGTGCGCAATCAAAGCATACTTGCGCGGCTTTGAATATTATTCGCTTCAGTTTAATGGTGAATGTTGGGGCGGTGATGAGAGTGTTGCAAACACATATTACTTGAACGGAGTATCGCATAACTGTAAAGATGGCGTTGGAGATGCTGGATCAAACTTTGTTTACAGAATCGGTGCTCCTATTGTAACTAAAGCTCTTCCTCCTGTGGTGACGCTAGGATGTTATTCAGACGATTTAGTTTTTCCGCGACCCTTGCCAACATTATTAggcaatttcaaaaatgatgttAATTGGGATTCATTGAACACGGACGAGATATTGAAGTTTTGCGCTTTATCAACAAATCAGAGAGGCTGGTCAGTGTTTGGGTTGCAGTACTATGGCGAATGCTGGAGTGATGAAAATGCAAACGGCTTATACGCTCGAGCTGGTGAATCAGAGGCTTGCTTCCATGGGATTGGCGGCATAAATGCATATTCTGTATATCgcctttatatttaa

Transcript

BRAKERKRET00000013596

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P59510	A disintegrin and metalloproteinase with thrombospondin motifs 20 OS=Homo sapiens OX=9606 GN=ADAMTS20 PE=1 SV=2
Q8TE60	A disintegrin and metalloproteinase with thrombospondin motifs 18 OS=Homo sapiens OX=9606 GN=ADAMTS18 PE=1 SV=3
Q4VC17	A disintegrin and metalloproteinase with thrombospondin motifs 18 OS=Mus musculus OX=10090 GN=Adamts18 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000160 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03029 all species →	ATP_bind_1	Conserved hypothetical ATP binding protein	Domain	Interproscan
PF00090 all species →	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF19030 all species →	TSP1_ADAMTS	Thrombospondin type 1 domain	Domain	Interproscan
PF19236 all species →	ADAMTS_CR_3	ADAMTS cysteine-rich domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004130 all species →	Family	GPN-loop GTPase	Interproscan
IPR036383 all species →	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR013273 all species →	Family	ADAMTS/ADAMTS-like	Interproscan
IPR000884 all species →	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050439 all species →	Family	ADAMTS and ADAMTS-like	Interproscan
IPR045371 all species →	Domain	ADAMTS/ADAMTS-like, cysteine-rich domain 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13723 all species →	ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030198 all species →	Biological Process	extracellular matrix organization	Interproscan
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0031012 all species →	Cellular Component	extracellular matrix	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKREP00000013596.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000013596.1 across 29 RNA-seq samples of Hydra viridissima. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

0TPM > 0

7Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole body	18	0	0.00	0.00
Whole	6	0	0.00	0.00
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	0	0.00	0.00
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	0	0.00	0.00
symbioic hydra M9 strain · symbioic hydra rep1	1	0	0.00	0.00
symbioic hydra M9 strain · symbioic hydra rep2	1	0	0.00	0.00
unannotated	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.